RetrogeneDB ID: retro_btau_177

Retrocopy location

• Organism: Cow (Bos taurus)
• Coordinates: 6:95805272..95805962(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSBTAG00000013149
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: NAA10
• Ensembl ID: ENSBTAG00000047702
• Aliases: None
• Description: N-alpha-acetyltransferase 10 [Source:UniProtKB/TrEMBL;Acc:G3N191]

Sequence

>retro_btau_177
ATGAACATCCGCAATGCTCGGCCAGACGACCTGATGAACATGCAACATTGCAACCTCCTTTGCCTTCCCGAGAACTACCA
GATGAAATACTATTTCTACCATGGCCTTTCTTGGCCCCAGCTCTCTTACATCGCTGAGGACGAGGACGGGAAGATTGTGG
GCTACGTCCTGGCCAAAATGGAGGAAGACCCAGATGATGTCCCTCACGGACACATAACCTCACTGGCTGTGAAGCGTTCC
CACCGGCGCCTGGGCCTAGCCCAGAAGCTTATGGACCAGGCCTCCAGGGCCATGATTGAGAACTTTAGCGCCAAGTACGT
GTCCCTGCACGTCAGGAAGAGTAACCGGGCAGCCTTGCACCTCTATTCTAACACTCTTAACTTTCAGATTAGTGAGGTGG
AACCCAGATACTATGCAGATGGAGAAGATGCTTATGCTATGAAGCGGGATTTGTCGCAGATGGCAGATGAGCTGAGGAGG
CAGTTACAGCTGAAGAAGGGCGGGTATGTGGTGCTGGGCTCCAGGGAGAACCAAGAGACCCAGGGTAGCACACTTCCTGG
TTCTAAAATGGCCTGTCAAGAGAAGAACCCGGCCACTGATGGTAGCGGGAGTGACAGCAAGGAACCCAGTGAATCCACGG
AAAGCCCTGATGCCCAGGACAGTTCAGAAGACTCCAACTCCACCTCCTAG

Alignment

ORF - retro_btau_177 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.06 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKISSDAQPVDSG
          MNIRNARP.DLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDE.GKIVGYVLAK...D...V..G
Retrocopy MNIRNARPDDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDEDGKIVGYVLAKMEEDPDDVPHG

Parental  RWVSLSLILNHGSGGLVHQLLSQAKTPPGKDMEETSMHMTERQSEMATLYVEVRIQELEVSWSSSPQLTG
          ...SL.....H...GL...L..QA.................R.S..A.L...........S.........
Retrocopy HITSLAVKRSHRRLGLAQKLMDQASRAMIENFSAKYVSLHVRKSNRAALHLYSNTLNFQISEVEPRYYAD

Parental  SMGAGAIQRAPQQLREGLRRHLELKEKGRHVVLGSIENKMEGKGNSLPSSGEACREEKGLVAEDSGGDSK
          ...A.A..R...Q....LRR.L.LK.KG..VVLGS.EN..E..G..LP.S..AC..EK......SG.DSK
Retrocopy GEDAYAMKRDLSQMADELRRQLQLK-KGGYVVLGSRENQ-ETQGSTLPGSKMAC-QEKNPATDGSGSDSK

Parental  DLSEVSETTESTDVKDSSEASDSAS
          ...E.SE.TES.D..DSSE.S.S.S
Retrocopy ---EPSESTESPDAQDSSEDSNSTS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
ERP005899_liver	0.00 RPM	1.51 RPM
ERP005899_muscle	0.00 RPM	21.17 RPM
SRP017611_brain	0.00 RPM	7.95 RPM
SRP017611_kidney	0.00 RPM	8.54 RPM
SRP017611_liver	0.00 RPM	7.55 RPM
SRP030211_testis	3.86 RPM	3.13 RPM

ChIP-Seq

Bos taurus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_btau_177 retrocopy.

TSS

Bos taurus was not studied using FANTOM5 data.

Lab

retro_btau_177 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_btau_177 has 2 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Callithrix jacchus	retro_cjac_132
Macaca mulatta	retro_mmul_21

---

Parental genes homology:

Parental genes homology involve 24 parental genes, and 25 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000018457	1 retrocopy	retro_amel_162,
Bos taurus	ENSBTAG00000047702	1 retrocopy	retro_btau_177 ,
Canis familiaris	ENSCAFG00000019415	1 retrocopy	retro_cfam_167,
Callithrix jacchus	ENSCJAG00000014506	1 retrocopy	retro_cjac_132,
Cavia porcellus	ENSCPOG00000011495	1 retrocopy	retro_cpor_10,
Dipodomys ordii	ENSDORG00000002753	1 retrocopy	retro_dord_529,
Equus caballus	ENSECAG00000015203	1 retrocopy	retro_ecab_717,
Felis catus	ENSFCAG00000028705	1 retrocopy	retro_fcat_51,
Homo sapiens	ENSG00000102030	1 retrocopy	retro_hsap_13,
Gorilla gorilla	ENSGGOG00000009788	1 retrocopy	retro_ggor_196,
Macropus eugenii	ENSMEUG00000006054	2 retrocopies	retro_meug_1787, retro_meug_554,
Myotis lucifugus	ENSMLUG00000014267	1 retrocopy	retro_mluc_152,
Macaca mulatta	ENSMMUG00000000322	1 retrocopy	retro_mmul_21,
Mustela putorius furo	ENSMPUG00000008989	1 retrocopy	retro_mputfur_1424,
Mus musculus	ENSMUSG00000031388	1 retrocopy	retro_mmus_1416,
Nomascus leucogenys	ENSNLEG00000013724	1 retrocopy	retro_nleu_57,
Otolemur garnettii	ENSOGAG00000013263	1 retrocopy	retro_ogar_260,
Pongo abelii	ENSPPYG00000020861	1 retrocopy	retro_pabe_2530,
Pan troglodytes	ENSPTRG00000022419	1 retrocopy	retro_ptro_23,
Pteropus vampyrus	ENSPVAG00000000463	1 retrocopy	retro_pvam_1225,
Sarcophilus harrisii	ENSSHAG00000005952	1 retrocopy	retro_shar_362,
Sus scrofa	ENSSSCG00000012791	1 retrocopy	retro_sscr_987,
Ictidomys tridecemlineatus	ENSSTOG00000010237	1 retrocopy	retro_itri_1435,
Tursiops truncatus	ENSTTRG00000007455	1 retrocopy	retro_ttru_198,