RetrogeneDB ID:

retro_btau_153

Retrocopy
location
Organism:Cow (Bos taurus)
Coordinates:7:14947959..14949330(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSBTAG00000046808
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:BT.65236
Ensembl ID:ENSBTAG00000000019
Aliases:None
Description:serine incorporator 1 precursor [Source:RefSeq peptide;Acc:NP_001030504]


Retrocopy-Parental alignment summary:






>retro_btau_153
ATGGGGAGCGTCTTGGGGCTGTGCTCCATGGCGAGCTGGATACCATGTTTGTGTGGCAGTGCCCTGTGTTTGCTGTGCCG
ATGCTGTCCTAGTGGAAATAACTCCACTGTAACTAGGTTGATCTATGCACTTTTTTTGCTTGTTGGAATGTGTATAGCTT
CTGTAATGTTGATACCTGGAATGGAAGAACAGCTGAATAAGACTTCTGGATTTTGTGAGAATGAGAAAGGAATGGTCCCT
TGTAATATTCTGTTTGGCTGTAAAGCTGTATACCGATTGTGTTTTGGCTTGGCTATGTTCTATCTTCTTCTCACTCTCTT
AATGATCAAAGTGAAGAGCAGCAGTGACCCTAGAGCTGCAATACACAATGGATTCTGGTTCTTTAAATTTGCTGCAGCAA
TTGCAATTATTACTGGGGCCTTCTTCATTCCAGAAGGAACTTTTACAACTGTGTGGTTTTATGTAGGCATGGCAGGTGCC
TTTTGCTTCATTCTCATACAGCTAGTCTTACTCATTGATTTTGCCCATTCATGGAATGAATCATGGGTTGTAAAAATGGA
AGAGGGGAACTCGAGATGTTGGTATGCAGCTTTGTTATCAGCTACAGCCCCGAATTATCTGCTGTCTTTAGTTGCTATCA
TCCTGTTTTTTGTTTACTATACTCATCCAGCCAGTTGTGCAGAAAATAAAGCATTCATCAGTGTCAACATGCTCCTCTGC
CTCGATGCTTCTATAATGTCCATACTGCCAAAAATCCAAGAATCACAACCAAGATCTGGTTTGTTACAGTCTTCAGTGAT
TACAGTCTACACAATGTATTTGACATGGTCTGCTATGACCAGTGAACCAGAAACAGAATGTAACCCAAGTCTACTGAACA
TAATTGGATATAATACAACAAGGACTATCTCAAAGGAGGGGCAGTCTGTACAGTGGTGTCATACTCAAGGAATTATTGGA
CTAATCCTCTTTTTACTGTGTGTATTTCATTCAAGCATCCATACTTCAAACAATAGTCAGGTTAATAAACTGACTCTAAC
AGTCAGTTTAGTTGATGAATCAACACTAATAGAAGATGGTGGAGCCAGAAATAATGGGTCACTTGAGGATGGTGATGATG
TTCACCGAGCCGTAGATAATGAAAGGGATGGTGTCACTTACAGTTACTCCTTCTTTCACTTCATGCTTTTCCTGGCTTCG
CTTTATATCATGATGACCCTTACCGACTGGTACAGGTATGAGCCTTCTCGTGAGATGAAAAGTCAGTGGACAGCTGTCTG
GGTGAAAATCTCTTCTAGTTGGATTGGCACTGTGCTGTATGTTTGGACACTGGTGGCAACACTTGTTCTTACAAGTCGTG
ATTTTGACTGA

ORF - retro_btau_153 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.28 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQLNKIPGFCENEKGMV
MASWIPCLCGSA.CLLCRCCPSGNNSTVTRLIYALFLLVG.C.A.VMLIPGMEEQLNK..GFCENEKGMV
RetrocopyMASWIPCLCGSALCLLCRCCPSGNNSTVTRLIYALFLLVGMCIASVMLIPGMEEQLNKTSGFCENEKGMV
ParentalPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAIHNGFWFFKFAAAIAIIIGAFFIPEGTFT
PCNIL.G.KAVYRLCFGLAMFYLLL.LLMIKVKSSSDPRAAIHNGFWFFKFAAAIAII.GAFFIPEGTFT
RetrocopyPCNILFGCKAVYRLCFGLAMFYLLLTLLMIKVKSSSDPRAAIHNGFWFFKFAAAIAIITGAFFIPEGTFT
ParentalTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAVVLFFVY
TVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWV.KMEEGNSRCWYAALLSATA.NYLLSLVA..LFFVY
RetrocopyTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVVKMEEGNSRCWYAALLSATAPNYLLSLVAIILFFVY
ParentalYTHPASCAENKAFISVNMLLCLGASIMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAMTNEPETECNP
YTHPASCAENKAFISVNMLLCL.ASIMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAMT.EPETECNP
RetrocopyYTHPASCAENKAFISVNMLLCLDASIMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAMTSEPETECNP
ParentalSLLNIIGYNTTSTVSKEGQSVQWWHTQGIIGLILFLLCVFYSSIRTSNNSQVNKLTLT---SDESTLIED
SLLNIIGYNTT.T.SKEGQSVQW.HTQGIIGLILFLLCVF.SSI.TSNNSQVNKLTLT....DESTLIED
RetrocopySLLNIIGYNTTRTISKEGQSVQWCHTQGIIGLILFLLCVFHSSIHTSNNSQVNKLTLTVSLVDESTLIED
ParentalGGARNDGSLEDGDDVHRAVDNERDGVTYSYSFFHFMLFLASLYIMMTLTNWYSFEDFK-IEVQWTAVWVK
GGARN.GSLEDGDDVHRAVDNERDGVTYSYSFFHFMLFLASLYIMMTLT.WY..E.......QWTAVWVK
RetrocopyGGARNNGSLEDGDDVHRAVDNERDGVTYSYSFFHFMLFLASLYIMMTLTDWYRYEPSREMKSQWTAVWVK
ParentalISSSWIGIVLYVWTLVAPLVLTNRDFD
ISSSWIG.VLYVWTLVA.LVLT.RDFD
RetrocopyISSSWIGTVLYVWTLVATLVLTSRDFD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
ERP005899_liver 0 .14 RPM 34 .82 RPM
ERP005899_muscle 7 .13 RPM 74 .54 RPM
SRP017611_brain 7 .99 RPM 241 .28 RPM
SRP017611_kidney 6 .88 RPM 173 .49 RPM
SRP017611_liver 2 .42 RPM 43 .27 RPM
SRP030211_testis 1 .23 RPM 23 .23 RPM

ChIP-Seq - click to see more details

Bos taurus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_btau_153 retrocopy.

TSS - click to see more details

Bos taurus was not studied using FANTOM5 data.

Lab - click to see more details

retro_btau_153 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_btau_153 has 0 orthologous retrocopies within eutheria group .

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG00000000019 1 retrocopy
retro_btau_153 ,




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