RetrogeneDB ID: retro_bdis_37

Retrocopy location

• Organism: Purple false brome (Brachypodium distachyon)
• Coordinates: 5:24925296..24925683(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: BRADI5G22610
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: BRADI2G52330
• Aliases: None
• Description: None

Sequence

>retro_bdis_37
ATGTCCGGCACCCCAAACCCGGGCGCCAGATCCGCCTTCGACGACGACGACCACGCGCATCTCCCGCTCTCGTCCTTCGA
CCCGTTCGCGGACGCCGAGGCGGCCACCGGCGGGGCAGCCGGGGACGGCGACTACGTGCACCTGCGCGTGCAGCAGCGCA
ATGGCAGGAAGACGCTGACGACGGTGCAGGGGCTCAGCGCCGGGTACAACTACGCCAGGGTGCTGCGGGATCTCAAGAAG
GAGCTCTGCTGCAACGGCACCGTCGTCGAGGACAAGGAGCTCGGCAACGTCATCCAGCTGCAGGGCGACCACCGCAAGCG
CGTCGCCGCCTTCCTCGCCAAGGCCGGCATCGCCAAGAAGGACGACATCAAGGTCCACGGCTTCTAG

Alignment

ORF - retro_bdis_37 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.9 %
• Parental protein coverage: 86.01 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NQTQQPSFMSDLDVQLP-SAFDPFAEANAEDSSAGAGSKDYVHVRVQQRNGRKSLTTVQGLKKEYSYNKI
          N......F..D....LP.S.FDPFA.A.A....A.AG..DYVH.RVQQRNGRK.LTTVQGL...Y.Y...
Retrocopy NPGARSAFDDDDHAHLPLSSFDPFADAEAATGGA-AGDGDYVHLRVQQRNGRKTLTTVQGLSAGYNYARV

Parental  LKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVATFLVQAGLAKKESIKIHGF
          L.DLKKE.CCNGTVV.D.ELG.VIQLQGD.RK.VA.FL..AG.AKK..IK.HGF
Retrocopy LRDLKKELCCNGTVVEDKELGNVIQLQGDHRKRVAAFLAKAGIAKKDDIKVHGF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Brachypodium distachyon was not studied using RNA-Seq expression data.

ChIP-Seq

Brachypodium distachyon was not studied using ChIP-Seq data.

EST

Brachypodium distachyon was not studied using EST data.

TSS

Brachypodium distachyon was not studied using FANTOM5 data.

Lab

retro_bdis_37 was not experimentally validated.

Homology

Retrocopy orthology:

Brachypodium distachyon does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Brachypodium distachyon	BRADI2G52330	1 retrocopy	retro_bdis_37 ,
Oryza punctata	OPUNC01G32810	1 retrocopy	retro_opun_46,