RetrogeneDB ID: retro_bdis_31

Retrocopy location

• Organism: Purple false brome (Brachypodium distachyon)
• Coordinates: 1:481453..481993(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: BRADI1G00600
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: BRADI2G08680
• Aliases: None
• Description: None

Sequence

>retro_bdis_31
ATGGCAGGAATCGGCCGGAACATGGTGTCCCCCTTGCTGGTCCTCAACCTCATCATGTACATCATCGTGATCGGCCTCGC
GAGCTGGAACCTCAACCACCACATCAACGGCCTCAACCACCCGGGCGCCGTCGGCAACGGCGCCACCTTCTACTTCCTCG
TCTTCGCCATCCTCGCCGGCGTCGTCGGCGCAGCCTCCAAGCTCGCCGGCATCCACCACGTCCGCTCGTGGCGCGGCGAC
AGCCTCGCCGCCACCGCGGGTTCCGCGCTCGTCGCGTGGGCCATCACGGCGCTCGCGTTCGGGTTGGCGTGCAAGGAGAT
CGGCATCGGTGGGTACAGGGGATGGCGCCTGCGCACCCTCGAGGCCTTCATCATCATACTCACGTTCACGCAGCTGATCT
ACGTCGCGATGCTTCACACGGGGCTTTTCGGGAACCAGTTCTCTAACGGTGCCGGGTATGGCGGGGAGCATGGTGGCTAT
GGCGATCATCACAACAAGGGGCCTGCCGGCATGGGCACCGCTGCCGCCGCCAGAGTCTGA

Alignment

ORF - retro_bdis_31 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.02 %
• Parental protein coverage: 57.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IGNFATGFFVLFALLAAVVGAASCVVGFMHLRFWNYHSMQPAASLGLVAWALTVLAMGLACQEISF-DRR
          .GN.AT..F..FA.LA.VVGAAS...G..H.R.W...S....A...LVAWA.T.LA.GLAC.EI.....R
Retrocopy VGNGATFYFLVFAILAGVVGAASKLAGIHHVRSWRGDSLAATAGSALVAWAITALAFGLACKEIGIGGYR

Parental  NAKLGTMEAFTIVLSVTQLVYVLAIHGG
          ...L.T.EAF.I.L..TQL.YV...H.G
Retrocopy GWRLRTLEAFIIILTFTQLIYVAMLHTG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Brachypodium distachyon was not studied using RNA-Seq expression data.

ChIP-Seq

Brachypodium distachyon was not studied using ChIP-Seq data.

EST

Brachypodium distachyon was not studied using EST data.

TSS

Brachypodium distachyon was not studied using FANTOM5 data.

Lab

retro_bdis_31 was not experimentally validated.

Homology

Retrocopy orthology:

Brachypodium distachyon does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Brachypodium distachyon	BRADI2G08680	1 retrocopy	retro_bdis_31 ,