RetrogeneDB ID:

retro_bdis_28

Retrocopy
location
Organism:Purple false brome (Brachypodium distachyon)
Coordinates:1:74103579..74105673(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:BRADI1G78010
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:BRADI1G13740
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_bdis_28
ATGGACGTCCCGGGCGGCGGGCACCAGATGGACGGCTACTTCTCAGGCCGGACCAAGATCCGGTCCCGCTCCATCCGCAT
CGCGGCCGCCGGGGTCATCAACCGCTCCGAACGCCTCAAGAACATCGGCCGGGTCTTCCAGGAAGACCTCAAGAACATCT
CCCTCAAGATCTACGACCCGCAGGACGCGTTCCTGATGCGGATGAACCGGCTGTTCCTCTTCGCCTGCATCGTCTCCGTC
GCCGTCGACCCGCTCTTCTTCTACCTCCCCGTCGTCAACGAGAACCAGAACAACACCTGCATCGGCTTCGACCGCGCCCT
GGCCACCTTCGCCACCGCCGTCCGCACCGCCGTCGACGCCTTCTACCTGGCCCGGATCGCGCTGCAGTTCCGCACCGCCT
TCATCGCCCCTTCCTCCCGCGTCTTCGGCCGCGGCGAGCTCGTCGTCGACTCCGCCGCCATCGCGCGCCGCTACGTGCGC
CGCTTCTTCGTCTTCGACCTCCTCTCCGTGCTGCCCTTGCCGCAGCTCCAGATCATCAAGTTCTTGCTGCGGCACAAGGG
GCAGGACCTGCTGCCCATCAAGACGGCGCTCTTCTTCATCGTGCTCGTCCAGTACGTGCCGCGGCTCGTCAGGATCTACC
CGATCACCTCCGAGCTGAAGCGGACCACGGGGGTCTTCGCCGAGACGGCTTTCGCCGGCGCCGCGTTCTACCTGCTGCTG
TACATGCTGGCGTCGCACATGGTGGGCGCGTTTTGGTACTTGCTGGCCATCGAGCGGCTGGACGACTGCTGGAGGGAGAA
GTGCACGGGGCTCAAGTTCCACCAGTGCAAGACTTACATGTACTGTGGTGGCGGGATACTGGGCCAGCCCGGGTTCGTCG
AGTGGAGGACCATGATCCGGCAGGTGCTGGCCCAGGAATGCGCGCCGATCGACGGCGGCGGCACCGGGTTCAACTACGGG
TTGTACACCACTGCCATCACCTCTGGGGTCACGTACACGCCTAACCTCTTTGCCAGGATCCTCTTCTGCCTCTGGTGGGG
GCTCCAGAACCTCAGCACCGTTGGGCAGGGGCTTGACCAGACGACGCACTACAAAGGGGAAGCGTTGTTTGCCATCCTGC
TGGCGCTCTTCGGGCTCATCCTCATGGCGCTGCTCATCGGCAACATGCAGACGTACCTCCAGTCGATGACGCTGCGGATG
GAGGAGATGCGGCTCAAGCGCCGCGACTCGGAACAATGGATGCACCACCGCCTGCTCCCCGACGACCTCCGCGACAGGGT
CTGGCGCCACAACCAGTACAAGTGGCTCGAGACGCGTGGCGTCGACGAGGACGGGCTCGTCAGCTGCCTGCCCAAGGACA
TCCGGAGAGACGTGAAGCGCCACCTCTGCCTCCGCCTCGTGCGCCGCGTGCCGCTGTTCGCGAACATGGACGAGCGACTC
CTCGACGCCATCTGCGAGCGGCTCAAGCCCAGCCTATGCACGGAGGCGACATACGTGGTGCGCGAAGGGGACCCGGTCGA
CGAGATGTTGTTCATCATCCGTGGCCGGCTCGAGAGCTCGACCACCGACGGCGGCCGGACCGGGTTCTTCAACAGGGGTT
TGTTGAAAGAAGGGGACTTCTGTGGGGAAGAGCTGCTGACGTGGGCGCTGGACCCCAAGGCGTCGGCGAACCTGCCGCTG
TCGACGCGCACCGTGAAGGCGATATCCGAGGTGGAAGGCTTCGCGCTGCACGCCGACGAGCTCAAGTTCGTGGCCGGGCA
GTTCAGGCGGCTGCACAGCAAGCAGCTGCAGCAGACCTTCAGGTTCTACTCGCAGCAGTGGCGCACCTGGGCGTCCTGCT
TCATCCAGGCGGCGTGGCGGAGGTTCCAGAAAAGGAGGGCGGTGGAGCAGCGGCGGAGGGAGGAGGACGAGATGTACATG
GCGGCGGAGGAGGTGGCGGCGTCGTCGAGCAGCCAGATGAAGACCACGTTCCTGGTGTCCAGGTTCGCCAAGAAGGCCAT
GCGCGGCGTGCAGCGCCAGCGGTCGCTCAAGGCCGAGAGCCTCATCATACTGCCCAAGCCGCCCGAGCCAGACTTCGGCA
AAATGGACTACTGA

ORF - retro_bdis_28 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.56 %
Parental protein coverage: 82.98 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVFQEDLKNTSRKIFDPQDRMLVRLNRSFLISCILSIAIDPLFFYTPRITDSMHGINICIGIDRELAVFTA
VFQEDLKN.S.KI.DPQD..L.R.NR.FL..CI.S.A.DPLFFY.P.........N.CIG.DR.LA.F..
RetrocopyVFQEDLKNISLKIYDPQDAFLMRMNRLFLFACIVSVAVDPLFFYLPVVNENQN--NTCIGFDRALATFAT
ParentalVFRSVVDLFFVARIVLQFRTAFIAPSSRVFGRGELVIDTMEIAKRYFRRFFIADVLSIVPLPQLVVWLFT
..R..VD.F..ARI.LQFRTAFIAPSSRVFGRGELV.D...IA.RY.RRFF..D.LS..PLPQL....F.
RetrocopyAVRTAVDAFYLARIALQFRTAFIAPSSRVFGRGELVVDSAAIARRYVRRFFVFDLLSVLPLPQLQIIKFL
ParentalKRVRGTAVLATKDNLVLVILLQYVPRLARIYPLSTELKRTSGVFAETALAGAAYYLLWYMLASHIVGAFW
.R..G...L..K..L....L.QYVPRL.RIYP...ELKRT.GVFAETA.AGAA.YLL.YMLASH.VGAFW
RetrocopyLRHKGQDLLPIKTALFFIVLVQYVPRLVRIYPITSELKRTTGVFAETAFAGAAFYLLLYMLASHMVGAFW
ParentalYMLSIERLSDCWRNACD--EFLGCNRIYMYCGRNLEEKEDPGFQEWITITRQVINETCEPQKDGEMPFNY
Y.L.IERL.DCWR..C....F..C...YMYCG........PGF.EW.T..RQV....C.P...G...FNY
RetrocopyYLLAIERLDDCWREKCTGLKFHQC-KTYMYCGGGILGQ--PGFVEWRTMIRQVLAQECAPIDGGGTGFNY
ParentalGIYSSAVQSNVIGSLDVTSKILFCLWWGLANLSTLGQGL-KTTIYTGEALFSITLATFGLILMAMLIGNI
G.Y..A..S.V.........ILFCLWWGL.NLST.GQGL..TT.Y.GEALF.I.LA.FGLILMA.LIGN.
RetrocopyGLYTTAITSGVTYTPNLFARILFCLWWGLQNLSTVGQGLDQTTHYKGEALFAILLALFGLILMALLIGNM
ParentalQTYLQSLTVRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWINTRGVDEEVLIQNLPKDLRRDIK
QTYLQS.T.R.EEMR.KRRDSEQWMHHRLLP..LR.RV.R..QYKW..TRGVDE..L...LPKD.RRD.K
RetrocopyQTYLQSMTLRMEEMRLKRRDSEQWMHHRLLPDDLRDRVWRHNQYKWLETRGVDEDGLVSCLPKDIRRDVK
ParentalRHLCLGLVRRVPLFANMDERLLDAICERLKPSLYTEKTHIIREGDPVDQMLFIIRGLLESITTDGGRSGF
RHLCL.LVRRVPLFANMDERLLDAICERLKPSL.TE.T...REGDPVD.MLFIIRG.LES.TTDGGR.GF
RetrocopyRHLCLRLVRRVPLFANMDERLLDAICERLKPSLCTEATYVVREGDPVDEMLFIIRGRLESSTTDGGRTGF
ParentalYNRSLLQEGAFCGEELLTWALDPKSGVSLPSSTRTVMALSEVESFALHAEELKFVAGQFRRMHSKQVQHT
.NR.LL.EG.FCGEELLTWALDPK....LP.STRTV.A.SEVE.FALHA.ELKFVAGQFRR.HSKQ.Q.T
RetrocopyFNRGLLKEGDFCGEELLTWALDPKASANLPLSTRTVKAISEVEGFALHADELKFVAGQFRRLHSKQLQQT
ParentalFRFYSQQWRTWAATYIQAAWRRHLKRKAAELRRREEEE
FRFYSQQWRTWA...IQAAWRR..KR.A.E.RRREE.E
RetrocopyFRFYSQQWRTWASCFIQAAWRRFQKRRAVEQRRREEDE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Brachypodium distachyon was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Brachypodium distachyon was not studied using ChIP-Seq data.

EST - click to see more details

Brachypodium distachyon was not studied using EST data.

TSS - click to see more details

Brachypodium distachyon was not studied using FANTOM5 data.

Lab - click to see more details

retro_bdis_28 was not experimentally validated.

Retrocopy orthology:
Brachypodium distachyon does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Brachypodium distachyon BRADI1G13740 1 retrocopy
retro_bdis_28 ,




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