RetrogeneDB ID: retro_atha_3

Retrocopy location

• Organism: Mouse-ear cress (Arabidopsis thaliana)
• Coordinates: 2:17604329..17610848(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: AT2G42270
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: AT1G20960
• Aliases: None
• Description: None

Sequence

>retro_atha_3
ATGACGAATTTGGGTGGTGGTGGTGCGGAGGAGCAAGCCAGGTTGAAGCAGTATGGGTACAAAGTCAATTCCAGTCTTGT
TCTTAACAGTGATGAGCGTCGTCGTGATACGCATGAATCTTCTGGTGAACCGGAGAGTCTCAGGGGTAGGATTGATCCGA
AATCCTTTGGAGATCGTGTCGTTAGGGGAAGGCCTCATGAGTTAGATGAGCGGCTTAATAAATCTAAGAAGAAGAAGGAA
CGTTGTGATGATTTGGTGTCTGCTCGTGAGAGCAAAAGAGTTCGTCTTAGGGAGGTGAGTGTACTTAATGATACGGAGGA
TGGTGTTTATCAGCCGAAGACTAAGGAAACAAGGGTTGCTTTTGAGATTATGCTTGGTCTTATCCAGCAGCAATTGGGTG
GGCAGCCTTTGGACATTGTTTGCGGTGCGGCTGATGAGATTTTGGCAGTTCTTAAGAATGAATCCGTCAAAAACCATGAA
AAGAAGGTAGAGATTGAGAAACTACTAAACGTTATTACTGATCAGGTTTTCAGTCAGTTTGTTTCGATTGGAAAACTGAT
TACAGACTATGAAGAGGGTGGTGATTCTTTAAGTGGTAAAGCTAGTGAGGATGGAGGACTTGATTATGATATTGGTGTTG
CCCTTGAATGTGAAGAGGATGATGATGAGAGTGATCTTGATATGGTCCAGGATGAAAAAGATGAGGAGGATGAAGATGTT
GTTGAGCTTAACAAAACTGGAGTTGTCCAGGTGGGTGTGGCAATAAACGGCGAGGATGCAAGACAGGCAAAGGAGGATAC
GAGTCTTAATGTTCTGGATATTGATGCTTATTGGCTTCAGAGAAAGATATCTCAAGAATATGAGCAGAAGATTGATGCAC
AAGAGTGCCAGGAACTCGCAGAAGAGCTGCTTAAGATACTTGCTGAGGGTAATGATAGGGATGTTGAGATCAAGCTGCTT
GAGCACCTTCAGTTTGAAAAGTTCAGCCTTGTTAAATTTCTGTTGCAAAACCGTCTTAAAGTTGTGTGGTGCACCCGTTT
GGCTAGGGGAAGAGACCAGGAAGAGAGGAATCAAATTGAGGAGGAGATGTTGGGGTTAGGTTCAGAGTTGGCAGCAATTG
TTAAGGAGTTGCATGCCAAAAGAGCAACAGCCAAAGAAAGGGAGGAGAAACGGGAGAAAGATATCAAAGAAGAAGCTCAA
CATCTTATGGATGATGATTCTGGTGTTGACGGAGACAGAGGCATGAGAGATGTTGATGATTTAGATTTGGAGAATGGTTG
GTTGAAGGGCCAGCGTCAGGTGATGGACCTGGAGAGCCTTGCTTTTAACCAAGGTGGTTTCACGAGGGAGAATAACAAGT
GTGAGCTTCCTGATCGCTCTTTCAGAATACGTGGCAAGGAATTTGATGAGGTTCATGTGCCGTGGGTTTCTAAAAAGTTT
GATAGTAATGAAAAGCTTGTGAAAATTAGCGATTTGCCAGAGTGGGCCCAACCAGCTTTTAGGGGAATGCAGCAGTTGAA
TAGGGTTCAGAGCAAAGTGTACGGCACTGCTCTTTTTAAGGCTGACAACATTCTTCTTTGTGCTCCAACTGGTGCTGGGA
AGACCAATGTTGCCGTGCTCACCATACTGCACCAGCTTGGATTGAATATGAACCCTGGTGGAACGTTTAATCATGGTAAT
TACAAAATTGTCTATGTTGCACCAATGAAAGCCCTTGTTGCTGAGGTCGTGGATAGTCTATCTCAACGTTTGAAGGATTT
TGGAGTTACTGTGAAGGAACTCAGTGGGGATCAGTCCCTTACTGGGCAAGAAATCAAAGAGACTCAGATAATTGTTACAA
CGCCAGAGAAGTGGGATATCATCACCAGGAAATCTGGAGATCGCACTTATACACAGCTTGTGAGGCTTCTTATAATCGAC
GAAATTCATCTTCTTGATGATAATCGAGGGCCTGTGCTTGAAAGTATTGTCGCTAGGACTCTTAGGCAGATTGAAAGCAC
AAAGGAGCATATTCGTCTGGTAGGTTTATCTGCAACACTGCCAAATTGTGACGATGTGGCTTCATTTTTGCGAGTGGATC
TTAAAAATGGGTTGTTTATATTTGACCGTAGCTACAGACCTGTGCCTCTCGGTCAGCAGTATATAGGAATTAATGTGAAA
AAGCCGTTACGGAGGTTCCAGTTGATGAATGATATATGTTATCAGAAAGTAGTGGCTGTTGCTGGAAAACACCAGGTCCT
TATTTTTGTTCATTCGAGGAAGGAAACAGCAAAAACTGCAAGGGCAATACGGGACACAGCTATGGCAAATGATACCCTCA
GCAGATTCTTGAAGGAAGATAGTCAAAGTCGTGAAATTCTTAAGTGTTTAGCTGGACTTCTCAAGAATAATGACCTGAAA
GAGCTTCTGCCTTATGGTTTTGCAATTCATCATGCTGGGTTGACAAGGACTGATCGTGAGATAGTTGAGAATCAATTTCG
CTGGGGGAATTTGCAAGTGTTGATTTCCACGGCAACTCTTGCCTGGGGTGTGAATTTGCCTGCACATACTGTCATTATCA
AAGGAACCCAAGTATATAATCCTGAGAGAGGGGAGTGGATGGAGCTGAGTCCTTTAGATGTTATGCAGATGATTGGTCGT
GCCGGAAGACCTCAATATGACCAACAAGGGGAGGGAATAATAATCACTGGATACAGCAAGCTACAGTATTATCTTCGTTT
GATGAATGAGCAACTACCTATTGAAAGCCAGTTTATTTCCAAACTTGCTGATCAGCTCAATGCTGAAATTGTGCTTGGAA
CCATTCAGAATGCTAGAGAAGCTTGCCACTGGCTTGGCTATACATATTTATATGTCCGCATGGTTCGTAATCCGACACTG
TATGGCGTATCGCCTGATGCCCTTGCAAAAGACTTGCTATTGGAGGAGAGAAGAGCTGATCTGATACATTCTGCTGCCAC
TATCTTGGACAAGAACAACCTGATTAAGTACGACAGGAAAAGTGGACACTTCCAGGTTACTGATTTGGGACGCATTGCTA
GCTACTACTACATAAGCCATGGAACAATAGCTGCATACAATGAGAATCTGAAGCCAACAATGAATGATATAGAGCTTTGT
CGTCTGTTCTCTCTGAGTGAGGAGTTCAAGTATGTCACTGTTCGACAAGATGAGAAGATGGAACTGGCAAAGCTTTTGGA
TCGTGTACCAATTCCGGTAAAGGAAACACTAGAAGATCCCAGTGCAAAGATCAACGTTTTGCTGCAAGTATATATTTCAA
AGCTAAAGCTCGAGGGTCTTTCTTTGACATCTGACATGGTTTATATTACCCAAAGTGCTGGACGTTTGTTACGAGCTATT
TTTGAGATTGTGTTGAAGAGGGGGTGGGCTCAACTGTCTCAGAAAGCTCTCAACTTGTCTAAAATGGTAGGGAAGAGGAT
GTGGAGTGTTCAGACACCCCTCTGGCAGTTTCCTGGAATTCCCAAGGAGATTCTGATGAAGTTGGAGAAAAACGATCTGG
TGTGGGAGAGGTACTATGATCTATCTTCACAGGAGCTAGGAGAGCTTATTTGTAATCCTAAGATGGGCAGACCACTTCAC
AAGTATATCCATCAGTTCCCAAAACTGAAACTTGCAGCACATGTTCAGCCGATTTCTCGTTCTGTTCTGCAGGTTGAGCT
CACGGTGACACCTGATTTCCACTGGGATGACAAAGCAAATAAATATGTTGAACCGTTTTGGATAATTGTGGAAGACAATG
ATGGTGAAAAGATCCTTCATCATGAGTACTTTCTTTTTAAAAAACGGGTTATTGATGAGGACCACACTTTGAACTTCACT
GTACCAATCTCTGAGCCAATTCCCCCACAGTATTTCATCCGAGTGGTTTCAGACAAATGGCTTGACTCGCCGACTGTGTT
ACCTGTATCTTTCAGGCATCTTATTCTTCCAGAAAAATACCCACCACCTACAGAGCTACTGGATTTGCAGCCCCTCCCGG
TGATGGCCCTAAGAAATCCTTCTTATGAAACTCTTTATCAGGATTTCAAGCATTTCAATCCAGTGCAGACTCAGGTCTTT
ACTGTTTTGTATAACACAAGTGACAATGTAGTGGTTGCTGCTCCAACAGGAAGTGGGAAGACTATATGTGCGGAGTTTGC
TATATTAAGGAATCATCTCGAAGGACCTGATTCTGCAATGCGTGTTGTCTATATAGCACCTCTTGAGGCTATTGCCAAGG
AGCAGTTTCGTGATTGGGAGAAAAAGTTCGGAAAGGGGCTTGGTTTACGGGTTGTTGAGTTAACTGGGGAGACATTATTG
GATCTTAAGTTGCTTGAGAAAGGTCAGATAATCATAAGTACTCCTGAGAAATGGGACGCTCTGTCCCGGAGGTGGAAACA
GAGAAAATATATCCAGCAGGTTAGTTTGTTTATCGTTGACGAGCTTCATTTAATTGGGGGTCAAGGTGGTCAAGTGTTGG
AGGTAATTGTCTCTAGAATGAGATATATTTCAAGTCAGGTTGGGAATAAAATCAGGATTGTTGCATTATCAACTTCCCTT
GCAAATGCCAAAGATCTTGGAGAGTGGATTGGGGCCAGTTCATGTGGCGTTTTTAACTTCCCGCCTAATGTTCGTCCTGT
CCCACTGGAGATCCACATTCATGGGGTGGACATATTGAGTTTTGAAGCCAGGATGCAGGCGATGACTAAGCCAACATACA
CTGCCATAGTACAGCATGCCAAGAACAAGAAACCAGCTATCGTTTTTGTCCCGACCCGTAAACATGTCCGCCTTACTGCT
GTGGATCTGATAGCATACTCGCACATGGACAACATGAAGAGCCCTGATTTCCTTTTAGGGAATCTGGAAGAATTAGAGCC
TTTTTTAATACAAATTTGTGAGGAAACTCTGAAGGAGACTTTACGCCATGGCATTGGCTACCTGCACGAGGGTTTAAGCA
ATCTGGATCAGGAGATTGTGACTCAGCTTTTTGAAGCTGGACGGATTCAGGTATGTGTAATGTCTAGTTCATTGTGTTGG
GGTACTCCATTGAAGGCACATTTGGTTGTTGTAATGGGAACACATTTCTACGATGGACGGGAAAATTCTCATTCGGATTA
CCCCATCTCTAATCTGCTCCAAATGATGGGGCGTGGTAGCCGACCTCTGCTTGACGACGCTGGGAAGTGTGTGATCTTCT
GTCATGCACCACGTAAAGAGTATTACAAGAAATTTTTGTATGAAGCTCTTCCGGTTGAGAGTCATCTTCAACATTTCTTG
CATGATAATTTCAATGCAGAAGTAGTTGCTAGAGTTATAGAGAACAAACAAGATGCTGTGGATTATCTTACCTGGAGCTT
CATGTACAGGAGGCTTCCCCAGAACCCTAACTACTACAATCTCCTGGGAGTGAGCCACAGACATTTATCTGATCACCTCT
CAGAGCTCGTTGAAAACACTTTGTCTGATCTTGAAGTGAGTAAATGCATTGAAATAGACAATGAGTTGGATCTCTCTCCT
CTCAATCTTGGTATGATTGCGTCATATTACTACATAAATTACACCACCATTGAGCGATTCAGTTCTCTCTTGGCTTCCAA
GACCAAGATGAAGGGTCTTCTTGAGATCTTGACTTCAGCTTCGGAGTATGACTTGATTCCTATACGTCCTGGTGAAGAGG
ACGCAGTTCGGAGACTCATCAATCACCAGAGGTTCTCTTTTCAAAACCCAAGATGCACAGACCCTCGTGTGAAGACAAGC
GCACTTCTTCAGGCGCATTTCTCAAGGCAAAAAATCAGCGGGAACCTTGTAATGGATCAGTGTGAGGTCCTTTTATCAGC
AACAAGGCTTCTTCAAGCAATGGTCGATGTGATATCGAGCAATGGCTGTCTGAATCTTGCTCTTTTAGCTATGGAAGTAA
GCCAGATGGTGACTCAAGGCATGTGGGATCGAGACTCCATGCTTCTGCAGCTTCCTCACTTCACAAAGGACTTAGCCAAA
AGGTGCCATGAGAATCCGGGGAATAACATTGAAACCATATTTGATCTTGTGGAAATGGAAGATGACAAACGCCAAGAGCT
TCTCCAAATGTCAGACGCTCAGCTTCTTGACATTGCCAGATTCTGCAACCGCTTCCCCAACATTGACCTTACATATGAGA
TTGTGGGAAGTAACGAGGTAAGCCCTGGAAAAGATATCACATTGCAGGTATTACTGGAGAGAGACATGGAGGGAAGGACC
GAGGTGGGACCTGTGGACGCGCCAAGATATCCTAAGACTAAAGAAGAAGGTTGGTGGCTAGTCGTTGGAGAAGCCAAGAC
GAACCAGTTGATGGCCATCAAGAGAATCTCCCTGCAACGGAAGGCGCAGGTGAAGCTGGAGTTTGCAGTACCAACTGAAA
CAGGAGAGAAGTCGTATACACTCTACTTCATGTGCGATTCTTACTTGGGTTGTGACCAGGAGTATTCTTTCACTGTTGAT
GTCAAAGATTCTGATGCCGCAGATCACATGGAAGAATGA

Alignment

ORF - retro_atha_3 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.81 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MANLGGG-AEAHARFKQYEYRANSSLVLTTDNRPRDTHEPTGEPETLWGKIDPRSFGDRVAKGRPQELED
          M.NLGGG.AE..AR.KQY.Y..NSSLVL..D.R.RDTHE..GEPE.L.G.IDP.SFGDRV..GRP.EL..
Retrocopy MTNLGGGGAEEQARLKQYGYKVNSSLVLNSDERRRDTHESSGEPESLRGRIDPKSFGDRVVRGRPHELDE

Parental  KLKKSKKKERDVVDDMVNIRQSKRRRLREESVLTDTDDAVYQPKTKETRAAYEAMLGLIQKQLGGQPPSI
          .L.KSKKK.....DD.V..R.SKR.RLRE.SVL.DT.D.VYQPKTKETR.A.E.MLGLIQ.QLGGQP..I
Retrocopy RLNKSKKK-KERCDDLVSARESKRVRLREVSVLNDTEDGVYQPKTKETRVAFEIMLGLIQQQLGGQPLDI

Parental  VSGAADEILAVLKNDAFRNPEKKMEIEKLLNKIENHEFDQLVSIGKLITDFQEGGDSGGGRANDDEGLDD
          V.GAADEILAVLKN....N.EKK.EIEKLLN.I....F.Q.VSIGKLITD..EGGDS..G.A..D.GLD.
Retrocopy VCGAADEILAVLKNESVKNHEKKVEIEKLLNVITDQVFSQFVSIGKLITDYEEGGDSLSGKASEDGGLDY

Parental  DLGVAVEFEENEEDDEESDPDMVEEDDDEEDD---EPTRTGGMQVDAGINDEDAGDANEGTNLNVQDIDA
          D.GVA....E.EEDD.ESD.DMV....DEED....E...TG..QV...IN.EDA..A.E.T.LNV.DIDA
Retrocopy DIGVAL---ECEEDDDESDLDMVQDEKDEEDEDVVELNKTGVVQVGVAINGEDARQAKEDTSLNVLDIDA

Parental  YWLQRKISQAYEQQIDPQQCQVLAEELLKILAEGDDRVVEDKLLMHLQYEKFSLVKFLLRNRLKVVWCTR
          YWLQRKISQ.YEQ.ID.Q.CQ.LAEELLKILAEG.DR.VE.KLL.HLQ.EKFSLVKFLL.NRLKVVWCTR
Retrocopy YWLQRKISQEYEQKIDAQECQELAEELLKILAEGNDRDVEIKLLEHLQFEKFSLVKFLLQNRLKVVWCTR

Parental  LARAEDQEERNRIEEEMRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLKDETGG-DGGRGRR
          LAR..DQEERN.IEEEM.GLG.EL.AIV..LHA.RATAKEREE...K.I.EEA..L.D...G.DG.RG.R
Retrocopy LARGRDQEERNQIEEEMLGLGSELAAIVKELHAKRATAKEREEKREKDIKEEAQHLMDDDSGVDGDRGMR

Parental  DVADRDSESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPWVSKKVDRNEKL
          DV.D.D.E.GW.KGQRQ..DLESLAF.QGG....N.KC.LP..S.R..GK..DEVHVPWVSKK.D.NEKL
Retrocopy DVDDLDLENGWLKGQRQVMDLESLAFNQGGFTRENNKCELPDRSFRIRGKEFDEVHVPWVSKKFDSNEKL

Parental  VKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTY
          VKI...P.WAQPAF.GMQQLNRVQSKVY.TALFKA.NILLCAPTGAGKTNVA.LTIL.QL..N.N..GT.
Retrocopy VKISDLPEWAQPAFRGMQQLNRVQSKVYGTALFKADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTF

Parental  NHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWDIITRKSG
          NHG.YKIVYVAPMKALVAEVV..LS.RLKD.GV.V.ELSGDQSLTG.EI.ETQIIVTTPEKWDIITRKSG
Retrocopy NHGNYKIVYVAPMKALVAEVVDSLSQRLKDFGVTVKELSGDQSLTGQEIKETQIIVTTPEKWDIITRKSG

Parental  DRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKK
          DRTYTQLVRLLIIDEIHLL.DNRGPVLESIVARTLRQIE.TKE.IRLVGLSATLPN..DVA.FLRVDLK.
Retrocopy DRTYTQLVRLLIIDEIHLLDDNRGPVLESIVARTLRQIESTKEHIRLVGLSATLPNCDDVASFLRVDLKN

Parental  GLFKFDRSYRPVPLHQQYIGISVKKPLQRFQLMNDLCYQKVLAGAGKHQVLIFVHSRKETSKTARAIRDT
          GLF.FDRSYRPVPL.QQYIGI.VKKPL.RFQLMND.CYQKV.A.AGKHQVLIFVHSRKET.KTARAIRDT
Retrocopy GLFIFDRSYRPVPLGQQYIGINVKKPLRRFQLMNDICYQKVVAVAGKHQVLIFVHSRKETAKTARAIRDT

Parental  AMANDTLSRFLKEDSVTRDVLHSHEDIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVS
          AMANDTLSRFLKEDS..R..L.......KN.DLK..LPYGFAIHHAGL.R.DREIVE..F..G..QVL.S
Retrocopy AMANDTLSRFLKEDSQSREILKCLAGLLKNNDLKELLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLIS

Parental  TATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSELQYYLS
          TATLAWGVNLPAHTVIIKGTQVYNPE.G.WMELSPLDVMQM.GRAGRPQYDQ.GEGIIITGYS.LQYYL.
Retrocopy TATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIITGYSKLQYYLR

Parental  LMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNPTLYGLAPDALAKDVVLEE
          LMNEQLPIESQFISKLADQLNAEIVLGT.QNAREACHWLGYTYLY.RMVRNPTLYG..PDALAKD..LEE
Retrocopy LMNEQLPIESQFISKLADQLNAEIVLGTIQNAREACHWLGYTYLYVRMVRNPTLYGVSPDALAKDLLLEE

Parental  RRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMGDIDLYRLFSLS
          RRADLIHSAATILDKNNL.KYDRKSG.FQVTDLGRIASYYYI.HGTIA.YNE.LKPTM.DI.L.RLFSLS
Retrocopy RRADLIHSAATILDKNNLIKYDRKSGHFQVTDLGRIASYYYISHGTIAAYNENLKPTMNDIELCRLFSLS

Parental  DEFKYVTVRQDEKMELAKLLDRVPIPIKETLEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRL
          .EFKYVTVRQDEKMELAKLLDRVPIP.KETLE.PSAKINVLLQ.YIS.LKLEGLSLTSDMVYITQSAGRL
Retrocopy EEFKYVTVRQDEKMELAKLLDRVPIPVKETLEDPSAKINVLLQVYISKLKLEGLSLTSDMVYITQSAGRL

Parental  VRALYEIVLKRGWAQLAEKALNLSKMVGKRMWSVQTPLRQFHGLSNDILMQLEKKDLVWERYYDLSAQEL
          .RA..EIVLKRGWAQL..KALNLSKMVGKRMWSVQTPL.QF.G....ILM.LEK.DLVWERYYDLS.QEL
Retrocopy LRAIFEIVLKRGWAQLSQKALNLSKMVGKRMWSVQTPLWQFPGIPKEILMKLEKNDLVWERYYDLSSQEL

Parental  GELIRSPKMGKPLHKFIHQFPKVTLSAHVQPITRTVLNVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGE
          GELI..PKMG.PLHK.IHQFPK..L.AHVQPI.R.VL.VELTVTPDF.WD.K..KYVEPFWIIVEDNDGE
Retrocopy GELICNPKMGRPLHKYIHQFPKLKLAAHVQPISRSVLQVELTVTPDFHWDDKANKYVEPFWIIVEDNDGE

Parental  KILHHEYFLLKKQYIDEDHTLHFTVPIFEPLPPQYFVRVVSDKWLGSETVLPVSFRHLILPEKYPPPTEL
          KILHHEYFL.KK..IDEDHTL.FTVPI.EP.PPQYF.RVVSDKWL.S.TVLPVSFRHLILPEKYPPPTEL
Retrocopy KILHHEYFLFKKRVIDEDHTLNFTVPISEPIPPQYFIRVVSDKWLDSPTVLPVSFRHLILPEKYPPPTEL

Parental  LDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILRNHHEGP
          LDLQPLPV.ALRNP.YE.LYQDFKHFNPVQTQVFTVLYNT.DNV.VAAPTGSGKTICAEFAILRNH.EGP
Retrocopy LDLQPLPVMALRNPSYETLYQDFKHFNPVQTQVFTVLYNTSDNVVVAAPTGSGKTICAEFAILRNHLEGP

Parental  DATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRWK
          D..MRVVYIAPLEAIAKEQFR.WE.KFGKGLGLRVVELTGET.LDLKLLEKGQIIISTPEKWDALSRRWK
Retrocopy DSAMRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVVELTGETLLDLKLLEKGQIIISTPEKWDALSRRWK

Parental  QRKYVQQVSLFIVDELHLIGGQHGPVLEVIVSRMRYISSQVINKIRIVALSTSLANAKDLGEWIGASSHG
          QRKY.QQVSLFIVDELHLIGGQ.G.VLEVIVSRMRYISSQV.NKIRIVALSTSLANAKDLGEWIGASS.G
Retrocopy QRKYIQQVSLFIVDELHLIGGQGGQVLEVIVSRMRYISSQVGNKIRIVALSTSLANAKDLGEWIGASSCG

Parental  LFNFPPGVRPVPLEIHIQGVDISSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAY
          .FNFPP.VRPVPLEIHI.GVDI.SFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDL.AY
Retrocopy VFNFPPNVRPVPLEIHIHGVDILSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLIAY

Parental  SHMDNPQSPDFLLGKLEELDPFVEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSS
          SHMDN..SPDFLLG.LEEL.PF..QI.EETLKETL.HGIGYLHEGLS.LDQEIVTQLFEAGRIQVCVMSS
Retrocopy SHMDNMKSPDFLLGNLEELEPFLIQICEETLKETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQVCVMSS

Parental  SLCWGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPRKEYYKKFL
          SLCWGTPL.AHLVVVMGT..YDGRENSHSDYP...LLQMMGR.SRPLLD.AGKCVIFCHAPRKEYYKKFL
Retrocopy SLCWGTPLKAHLVVVMGTHFYDGRENSHSDYPISNLLQMMGRGSRPLLDDAGKCVIFCHAPRKEYYKKFL

Parental  YEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNLQGVSHRHLSDHLSEL
          YEA.PVES.LQHFLHDNFNAEVVA.VIENKQDAVDYLTW.FMYRRLPQNPNYYNL.GVSHRHLSDHLSEL
Retrocopy YEALPVESHLQHFLHDNFNAEVVARVIENKQDAVDYLTWSFMYRRLPQNPNYYNLLGVSHRHLSDHLSEL

Parental  VENTLSDLEASKCIEVEDEMELSPLNLGMIASYYYISYTTIERFSSLLSSKTKMKGLLEILTSASEYDMI
          VENTLSDLE.SKCIE...E..LSPLNLGMIASYYYI.YTTIERFSSLL.SKTKMKGLLEILTSASEYD.I
Retrocopy VENTLSDLEVSKCIEIDNELDLSPLNLGMIASYYYINYTTIERFSSLLASKTKMKGLLEILTSASEYDLI

Parental  PIRPGEEDTVRRLINHQRFSFENPKCTDPHVKANALLQAHFSRQNIGGNLAMDQRDVLLSATRLLQAMVD
          PIRPGEED.VRRLINHQRFSF.NP.CTDP.VK..ALLQAHFSRQ.I.GNL.MDQ..VLLSATRLLQAMVD
Retrocopy PIRPGEEDAVRRLINHQRFSFQNPRCTDPRVKTSALLQAHFSRQKISGNLVMDQCEVLLSATRLLQAMVD

Parental  VISSNGWLNLALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAKRCQENPGKNIETVFDLVEMEDEERQE
          VISSNG.LNLALLAMEVSQMVTQGMW.RDSMLLQLPHFTKDLAKRC.ENPG.NIET.FDLVEMED..RQE
Retrocopy VISSNGCLNLALLAMEVSQMVTQGMWDRDSMLLQLPHFTKDLAKRCHENPGNNIETIFDLVEMEDDKRQE

Parental  LLKMSDAQLLDIARFCNRFPNIDLTYEIVGSEEVNPGKEVTLQVMLERDMEGRTEVGPVDSLRYPKTKEE
          LL.MSDAQLLDIARFCNRFPNIDLTYEIVGS.EV.PGK..TLQV.LERDMEGRTEVGPVD..RYPKTKEE
Retrocopy LLQMSDAQLLDIARFCNRFPNIDLTYEIVGSNEVSPGKDITLQVLLERDMEGRTEVGPVDAPRYPKTKEE

Parental  GWWLVVGDTKTNQLLAIKRVSLQRKVKVKLDFTAPSEPGEKSYTLYFMCDSYLGCDQEYSFSVDVKGSGA
          GWWLVVG..KTNQL.AIKR.SLQRK..VKL.F..P.E.GEKSYTLYFMCDSYLGCDQEYSF.VDVK.S.A
Retrocopy GWWLVVGEAKTNQLMAIKRISLQRKAQVKLEFAVPTETGEKSYTLYFMCDSYLGCDQEYSFTVDVKDSDA

Parental  GDRMEE
          .D.MEE
Retrocopy ADHMEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Arabidopsis thaliana was not studied using RNA-Seq expression data.

ChIP-Seq

Arabidopsis thaliana was not studied using ChIP-Seq data.

EST

Arabidopsis thaliana was not studied using EST data.

TSS

Arabidopsis thaliana was not studied using FANTOM5 data.

Lab

retro_atha_3 was not experimentally validated.

Homology

Retrocopy orthology:

Arabidopsis thaliana does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Arabidopsis thaliana	AT1G20960	1 retrocopy	retro_atha_3 ,
Arabidopsis lyrata	fgenesh2_kg.1__2288__AT1G20960.1	1 retrocopy	retro_alyr_6,