RetrogeneDB ID: | retro_amel_74 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
| Coordinates: | GL192572.1:1238012..1238879(+) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000020266 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | OTUD6B | ||
| Ensembl ID: | ENSAMEG00000006971 | ||
| Aliases: | None | ||
| Description: | OTU domain containing 6B [Source:HGNC Symbol;Acc:24281] |
Retrocopy-Parental alignment summary:
>retro_amel_74
AATATCATGGAAGATTCTCAGAGTGAGCAACAGCGGATAATACGACGCCACAACCGCGAGAAGAAAGAGCTGCAGGCCCG
CATCCAGATCATGAAGAATTCGGTCCCCAGGAGCGACAAGACGAGAAGAAAGCAGTTGCTCCTGGACGTGGCCCGCCTCG
AGGCTGAGATGGAGCAGAAGCACCAGCAGGAGCTGGAGAAGTTCGAAGAGAATTTCCCCGATTACGTCAACCTCGACTCC
GTCACAGAAGATCTTGCCAAGATGGATCTTGAGAATCAGCCTCCCCGCCAGTCGAGGGCTCAGAGAAGGCGCGAAAGAAG
GGCAGCCCTCGAGAGAGCGCACAGGGAGAGGATCGCCGAGGCCGAGATGGAGCACCTGGCCAGCTTCCGCCGTGAAGAGG
AGGAGAAGATCGCTGCAATCCTAGGGCCCAAGAATCTGGAGCTGAAGGATATCCCAGCTGACGGCCACTGCATGTATCGC
GCCATCCAAGACCAGCTGGTGTTCTCCGTGACCGTGGAGAGCCTGCGGAGCCGCACCGCTGACTACATGCGGAAGCACGT
GGACGACTTCCTGCCCTTTTTCAGCGACGCAGACACCGGCAACGCCTACAGCCGCGAAGATTTCCTGAGCTACTGCGACG
ACATCGTGCGCAGCCCGTCGTGGGGAGGCCTGGTCGAGCTGCGGGCCCTGTCGCACGTCCTGCAGACCCCCATCGAGGTG
ATCCAGGCCGATTCGCCTGCCATGGTCATCGGGGGTGAATACCCCAGGAAGCCGCTCACCCTCGTCTACCTGCGCTACGC
CTGCAACCTCGGAGAGCACTACAACTCGGTGAAGCAGCTCGATGCCGGCGCCGTCGGGGGCGCAGCC
AATATCATGGAAGATTCTCAGAGTGAGCAACAGCGGATAATACGACGCCACAACCGCGAGAAGAAAGAGCTGCAGGCCCG
CATCCAGATCATGAAGAATTCGGTCCCCAGGAGCGACAAGACGAGAAGAAAGCAGTTGCTCCTGGACGTGGCCCGCCTCG
AGGCTGAGATGGAGCAGAAGCACCAGCAGGAGCTGGAGAAGTTCGAAGAGAATTTCCCCGATTACGTCAACCTCGACTCC
GTCACAGAAGATCTTGCCAAGATGGATCTTGAGAATCAGCCTCCCCGCCAGTCGAGGGCTCAGAGAAGGCGCGAAAGAAG
GGCAGCCCTCGAGAGAGCGCACAGGGAGAGGATCGCCGAGGCCGAGATGGAGCACCTGGCCAGCTTCCGCCGTGAAGAGG
AGGAGAAGATCGCTGCAATCCTAGGGCCCAAGAATCTGGAGCTGAAGGATATCCCAGCTGACGGCCACTGCATGTATCGC
GCCATCCAAGACCAGCTGGTGTTCTCCGTGACCGTGGAGAGCCTGCGGAGCCGCACCGCTGACTACATGCGGAAGCACGT
GGACGACTTCCTGCCCTTTTTCAGCGACGCAGACACCGGCAACGCCTACAGCCGCGAAGATTTCCTGAGCTACTGCGACG
ACATCGTGCGCAGCCCGTCGTGGGGAGGCCTGGTCGAGCTGCGGGCCCTGTCGCACGTCCTGCAGACCCCCATCGAGGTG
ATCCAGGCCGATTCGCCTGCCATGGTCATCGGGGGTGAATACCCCAGGAAGCCGCTCACCCTCGTCTACCTGCGCTACGC
CTGCAACCTCGGAGAGCACTACAACTCGGTGAAGCAGCTCGATGCCGGCGCCGTCGGGGGCGCAGCC
ORF - retro_amel_74 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 55.76 % |
| Parental protein coverage: | 50.62 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | VLAEELDEEEQLVRRHRKEKKELQAKIQGMKNAVPKNDKKRRKQLTEDVAKLEAEMEQKHKEELEQLKLN |
| .......E.....RRH..EKKELQA.IQ.MKN.VP..DK.RRKQL..DVA.LEAEMEQKH..ELE....N | |
| Retrocopy | IMEDSQSEQQRIIRRHNREKKELQARIQIMKNSVPRSDKTRRKQLLLDVARLEAEMEQKHQQELEKFEEN |
| Parental | SKES-KIDSVAVNISNLVLESQPPRISKAQKRRDKKAALEKEREERIAEAEIENLSGARHIESEKLAEIL |
| .......DSV........LE.QPPR.S.AQ.RR...AALE....ERIAEAE.E.L...R..E.EK.A.IL | |
| Retrocopy | FPDYVNLDSVTEDLAKMDLENQPPRQSRAQRRRERRAALERAHRERIAEAEMEHLASFRREEEEKIAAIL |
| Parental | AARQLEIKQIPSDGHCMYRAIEDQL |
| ....LE.K.IP.DGHCMYRAI.DQL | |
| Retrocopy | GPKNLELKDIPADGHCMYRAIQDQL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |