RetrogeneDB ID:

retro_amel_206

Retrocopy
location
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192353.1:1611913..1612333(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SNAP23
Ensembl ID:ENSAMEG00000015774
Aliases:None
Description:synaptosomal-associated protein, 23kDa [Source:HGNC Symbol;Acc:11131]


Retrocopy-Parental alignment summary:






>retro_amel_206
ATGAATCACCCATCATCAGAAGAAATTCAACTGAGGGCTCACCAGGTTATGGACGGGTCTCTGGAAAATTCAAGAAGAAT
CCTGGGTTTAACCATTGAGTCTCAGGATGTAAGAGTCAAGACTAACACTATGCTGGATGAATAAGGGGTGCAAATAAACC
ATATACAAGAAGACATGGACCAAGTAAGTAGAGACGTGAGAGAGGCAGAGAAAATGTTAGCAGGACTCAATGGGTGCTGT
GGCCTTTGTGTCTGCCCATGTAACAAGATAAAGAAGATCGAGGCTGGTAAGGCTCATAAGGCAACATAGAGAGATGGCAG
AGACAACTCTTCTAGCAGTGTAATATCTAAGCAGCCAGGCCATGTGACAAATGGTCAGCCTCAGCAAACAACCATAAGAG
CCATCAATGGCAGATACATA

ORF - retro_amel_206 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65. %
Parental protein coverage: 66.35 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMDNLSSEEIQLRAHQVTDESLESTRRILGLALESQDAGIKTITMLDEQGEQLNRIEEGMDQINKDMREAE
M...SSEEIQLRAHQV.D.SLE..RRILGL..ESQD...KT.TMLDE.G.Q.N.I.E.MDQ...D.REAE
RetrocopyMNHPSSEEIQLRAHQVMDGSLENSRRILGLTIESQDVRVKTNTMLDE*GVQINHIQEDMDQVSRDVREAE
ParentalKTLTELNKCCGLCVCPCNRTKNFESGKAYKSTWGDGGDNSPSDVVAKQPGRVTNGQPQQPATGAASGGYI
K.L..LN.CCGLCVCPCN..K..E.GKA.K.T..DG.DNS.S.V..KQPG.VTNGQPQQ....A..G.YI
RetrocopyKMLAGLNGCCGLCVCPCNKIKKIEAGKAHKAT*RDGRDNSSSSVISKQPGHVTNGQPQQTTIRAINGRYI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Ailuropoda melanoleuca was not studied using RNA-Seq expression data.