RetrogeneDB ID:

retro_amel_1745

Retrocopy
location
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL194171.1:222698..223274(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MND1
Ensembl ID:ENSAMEG00000018446
Aliases:None
Description:meiotic nuclear divisions 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:24839]


Retrocopy-Parental alignment summary:






>retro_amel_1745
GGACTGAGTGCAGAGGAACAGAGAGCCCACATGATGGAAATATATTTTGAGTTGAAAGATCTTCAATTAAAGACATGGAG
AAGATTGTCCCCCAAAAGAAAGGCCTTCCTGCTCTGTCAGTAAAAGAAGTCCTTCCAAGTTTAGTTGATGATAGTGTGGT
TGGCTGGGAGAAGATTGGAACATCTAATGATTGTTGGGCTTTTCCAAGGAAAGTTCTTCACGTGAGGAAATGTAGGTAGG
AGGTCTGGAATCTCAGTTATCTGAGAGAAACCAAAAGCACGCAGACCTACCAAAAACCATCCAGAAAATAAAATTGGTTG
ACATGAACCAACCATGCTAGCAAAAGAGCTTTTTAAACTGAGACCAAAGGGAGCAGAAGTAGAAAAATACAAAGAATGTG
ACCTGGAAGTTATAGAGGAAATATGCCAAGCAAATAAAGTAGCCAAAAAAGCTGCTGACAGATGGAGTGATAATGTATTT
GCAATAAAATCTTGGGCCAAAAGAGAAATTGGATTTGAAGAAAATAAAACTGATTTTAAAAATTTTGGGATTCCAGAAGA
CTTAGACTAAATAGAC

ORF - retro_amel_1745 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.14 %
Parental protein coverage: 98.04 %
Number of stop codons detected: 3
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalGLSAEEKRARMMEIFFETKDVFQL-KDMEKIAPKEKGITAMSVKEVLQSLVDDGMVDCERIGTSNYYWAF
GLSAEE.RA.MMEI.FE.KD..QL.KDMEKI.P..KG..A.SVKEVL.SLVDD..V..E.IGTSN..WAF
RetrocopyGLSAEEQRAHMMEIYFELKDL-QL<KDMEKIVPQKKGLPALSVKEVLPSLVDDSVVGWEKIGTSNDCWAF
ParentalPSKALHARKRKLEV-LESQLSEGNQKHASLQKSIEKA-KIGRHETEERTMLAKELSSLRDQREQLKTEVE
P.K.LH.RK...EV.LESQLSE.NQKHA.L.K.I.K..KIG.HE....TMLAKEL..LR.........VE
RetrocopyPRKVLHVRKCR*EV<LESQLSERNQKHADLPKTIQKI<KIG*HEP---TMLAKELFKLRPKGAE----VE
ParentalKYKECDPQVVEEIRQANKVAKEAANRWTDNIFAIKSWAKRKFGFEENKID-KNFGIPEDFDYID
KYKECD..V.EEI.QANKVAK.AA.RW.DN.FAIKSWAKR..GFEENK.D.KNFGIPED.D.ID
RetrocopyKYKECDLEVIEEICQANKVAKKAADRWSDNVFAIKSWAKREIGFEENKTDFKNFGIPEDLD*ID

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide