RetrogeneDB ID:

retro_amel_1495

Retrocopy
location
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL193497.1:214954..215130(+)
Located in intron of:ENSAMEG00000003136
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ELOF1
Ensembl ID:ENSAMEG00000000064
Aliases:None
Description:elongation factor 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28691]


Retrocopy-Parental alignment summary:






>retro_amel_1495
ACTTGCCCCTCCTGCAACCACGAGAAGTTTTGTGAGGAGAAAATGGACCGTGCCTGCAACACCAGAGTCATCTCTTGTAT
GTGTGCCTAGAGAAATCCCAGACACTGGTCACCTATCTGTCAGAACCAATGGATGTATACAGCAATTGGACAGACGCCCA
TGAGGAAGCCAGTCAG

ORF - retro_amel_1495 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70. %
Parental protein coverage: 71.08 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalTCPFCNHEKSCDVKMDRARNTGVISCT-VCLEEFQTPITYLSEPVDVYSDWIDACEAANQ
TCP.CNHEK.C..KMDRA.NT.VISC..VCLE..QT..TYLSEP.DVYS.W.DA.E.A.Q
RetrocopyTCPSCNHEKFCEEKMDRACNTRVISCM<VCLEKSQTLVTYLSEPMDVYSNWTDAHEEASQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Ailuropoda melanoleuca was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Ailuropoda melanoleuca was not studied using ChIP-Seq data.