RetrogeneDB ID:

retro_amel_1470

Retrocopy
location
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL193454.1:658981..659589(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSAMEG00000003497
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_amel_1470
ATAGGCACTTGGAAGTACACCCAGGAGCTGTAGAGGAAGAAGCAGTCTGATGTAATGTCTTTTCTTCCCGGGGTACACTG
TGGGCAGTACTGACAGCTGTCTGCACTACACAGCCCAGCCCTGCCCAACCTGGCCCGATAAAGCACACAGACTGGGATAC
AAAGCCAAGCAAGGTTATGTCCTACGTCAGATTCACATGCGACATGGTGGCCGCAAACGCCCAGTTCCTAAGGGTGTGAC
CTATGGCAAACCTGTCCATCCTGGGGTTAACCAGCTGAAGTCGCCCTAAGCCTTCAGTCTGTTGCAGAGGAGTGAGCTGG
ATGCCACTGTGGGGCTATGAGGGTCCTGAATTCTTACTGGATTGGCAAAGATTCCACGTACAAATTCTTTGAGGTCATCC
TCATTGATCCGATCCATAAAGCTACCGAAGAAATCCTGAAACCCAGTGGATCACCAAACCAGTCCACCAGCACAGGGAGA
TATGAGAGCTGACACATGCAGGCCACAAGAGCCATGGCCTTGGAAAGGTTCCCAAGTTCCACCACGTTACTGGTGGTTCT
CTCCATGCAGAAAGGAGACAATGCAATACTCTCCAGCTTCACTGTTAC

ORF - retro_amel_1470 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.39 %
Parental protein coverage: 99.51 %
Number of stop codons detected: 4
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRA-PRPTRPDKARRLGYKAKQGYVIYRIRVRRG
.G..KY.QEL.RKKQSDVM.FL..V.C.QY.QLSALH...P.PT.PDKA.RLGYKAKQGYV...I..R.G
RetrocopyIGTWKYTQEL*RKKQSDVMSFLPGVHCGQY*QLSALHSP>PCPTWPDKAHRLGYKAKQGYVLRQIHMRHG
ParentalGRKRPVPKGATYGKPVHHGVNQLK-FARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDSL
GRKRPVPKG.TYGKPVH.GVNQLK..A.SLQSVAEE.AG.HCGA.RVLNSYW.G.DSTYKFFEVILID..
RetrocopyGRKRPVPKGVTYGKPVHPGVNQLK<VALSLQSVAEE*AGCHCGAMRVLNSYWIGKDSTYKFFEVILIDPI
ParentalHK-TIKRDPDPKWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRY
HK....R.P...WITKPVH.HRE...LT.AG.KS.GLGK..KFHH..GGS..A..R..NTLQLH.Y
RetrocopyHK<SYRRNPETQWITKPVHQHREI*ELTHAGHKSHGLGKVPKFHHVTGGSLHAERRQCNTLQLHCY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide