RetrogeneDB ID:

retro_amel_1431

Retrocopy
location
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL193363.1:726830..727393(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ARPC1A
Ensembl ID:ENSAMEG00000006322
Aliases:None
Description:actin related protein 2/3 complex, subunit 1A, 41kDa [Source:HGNC Symbol;Acc:703]


Retrocopy-Parental alignment summary:






>retro_amel_1431
GTGGGTAAGCAAACACGTTACAAGGTCCTTGGTTCAGACTGGCATCCCAACAATGTCTTCCTGGCAGTAGGATTATGTGA
CTTCAAATGCACAGTGCTTCTGTATACATTAAAGAAGTGAATGAAAACCAACCAGTATGCCGTAGGGCACCAAGATTCAT
TTTGGTTAGCTGATATCAGTTCAGTGGTACTGGGAGTTGGGTCTCAGCTTCACCTTCTCTGCTAGTGGGAGCTCTGTGGC
CTAGGTCAGCCATGACTGCAATGTGCCTATTGCTGATGCCTCAAACAGTGTTCAGGTTTCATCTGAAAACAGTTACTACC
ACTCCTGAAAGCTGAATGAATTATTTGTCTCAGACAACACAGCATTGTGTAGCTGCCAGCCATGATTGCTACTCAGTGTT
CTTTAATTAAGATGACCATGGCTCTTTGACTTTAGTCTCCAAACTGGACATTCCAAAACACAGCATCCAATACAACAGGT
TAGCTATGGAATACTTCCAGAACATGGACAAGACAGTCACAACTGAGTACTACATCACAGCCTCAGAGATGCTGCACCAG
AAT

ORF - retro_amel_1431 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 52.58 %
Parental protein coverage: 51.08 %
Number of stop codons detected: 4
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVF-SAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGG
..K..R..VL..DWHPNNV.LA.G.CDFKC.V..S.YIKEV.E.....P.....P...L.S....SGTG.
RetrocopyVGKQTRYKVLGSDWHPNNVFLAVGLCDFKCTVL<SVYIKEVNE---NQPVCRRAPRFILVS*YQFSGTGS
ParentalWVHG-VSFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLP-LLSVSFVSENSVV-AAGHDCCPMLF
WV.....FSASGS..A.VSHD..V..ADAS.SVQVS..........L...FVS.N.....A....C...F
RetrocopyWVSA<FTFSASGSSVA*VSHDCNVPIADASNSVQVSSENSYYHS*KLNELFVSDNTAL>VAASHDCYSVF
Parental-NYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQN
.N.DD.G.LT.VSKLDIPK.SIQ.N..AME.F.NMDK..TTE...TA.E.LHQN
RetrocopyFN*DDHGSLTLVSKLDIPKHSIQYNRLAMEYFQNMDKTVTTEYYITASEMLHQN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide