RetrogeneDB ID: retro_amel_1014

Retrocopy location

• Organism: Panda (Ailuropoda melanoleuca)
• Coordinates: GL192829.1:1037548..1037725(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSAMEG00000001058
• Aliases: None
• Description: None

Sequence

>retro_amel_1014
AGTAGCACCACAGTGCCCAGTGCCCCCCAGGCCCATAGTGACCCTACAGCAGATTATGTGTTGGGGCCTTTCCTCCTCAT
CGCCTGAGTCAGGGGTGTGGTGGCTGTGGTAATGCACGTCCAAAATCAAAAGCAGGTGGACCGGCGTCACCGTCACTTAC
TCCCCGTGGATAGTTAC

Alignment

ORF - retro_amel_1014 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.71 %
• Parental protein coverage: 57.84 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SNTTVPNAPQANSDSMVGYVLGPFFLITLVGVVVAVVMYVQKKKRADRLRHHLLPMYSY
          S.TTVP.APQA.SD....YVLGPF.LI..V..VVAVVM.VQ..K..DR...HLLP..SY
Retrocopy SSTTVPSAPQAHSDPTADYVLGPFLLIA*VRGVVAVVMHVQNQKQVDRRHRHLLPVDSY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Ailuropoda melanoleuca was not studied using RNA-Seq expression data.

ChIP-Seq

Ailuropoda melanoleuca was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_amel_1014 retrocopy.

TSS

Ailuropoda melanoleuca was not studied using FANTOM5 data.

Lab

retro_amel_1014 was not experimentally validated.

Homology

Retrocopy orthology:

Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000001058	1 retrocopy	retro_amel_1014 ,
Bos taurus	ENSBTAG00000034519	1 retrocopy	retro_btau_261,
Equus caballus	ENSECAG00000005108	3 retrocopies	retro_ecab_236, retro_ecab_474, retro_ecab_700,
Myotis lucifugus	ENSMLUG00000011876	1 retrocopy	retro_mluc_137,
Mus musculus	ENSMUSG00000062753	1 retrocopy	retro_mmus_1543,
Oryctolagus cuniculus	ENSOCUG00000013398	1 retrocopy	retro_ocun_625,
Pelodiscus sinensis	ENSPSIG00000004692	1 retrocopy	retro_psin_32,