Parental gene: | Solyc04g079920.2 |
| Aliases: | None |
| Description: | None |
| Organism: | Tomato (Solanum lycopersicum) |
| Coordinates: | 4:64244782..64251108(+) |
>Solyc04g079920.2
ATGAGGGAGAGAAGGACTGATAAACACTGCTTTGATTTGGAGGTCCCGTCCAGTAAATCTCAAAAGCTGTGTTCTTCAAC
TTCATCAGATTCGCGGATTTGCTTTGTACTGAATCGCAGAATGATGAAGGATGTTCAGGACAAAAGCAGTGTTGAGTACC
AGAGGATGACTTGGGATGCTCTGAGGAAAAGTATCAATGGGCTGGTGAATAAAGTTAATGCAGCAAACCTCAAAAACATT
ATTCCAGAGTTGTTTGCAGAGAATTTGATCCGTGGGAGAGGGCTGTTCTGTAGATCCTGTATGAAGTCCCAAATGGCTTC
TCCCGGTTTTACTGATGTATTTGCTGCTTTGGTAGCAGTTGTTAACACCAAGTTCCCAGAAGTGGGTGATCTGTTGCTAA
GAAGGATCATACTGCAGCTGCAAAGAGCTTATAAACGTAATGATAAGCCTCAGCTGTTAGCAGCTGTCAAGTTTATTGCT
CACCTTGTAAACCAGCAAATTGTTCACGAGCTTATTGCTCTCGAACTACTTACAGTTTTGTTGGAGAAACCTACAGATGA
TAGTGTTGAAGTTGCAGTTGGTTTTGTTACAGAGTGTGGTTCAATGCTTCAGGACCTCTGTCCACGAGGATTGCATGGAA
TCTTTGAGCGGTTCCGTGGTATACTTCATGAAGGAGAAATAGATAAACGGGTTCAGTTCTTGATTGAAAGCCTCTTTGCA
TTGCGAAAAGCAAAGTTTCAGGGTTACCAAGCTGTTAGACCAGAGCTTGACCTTGTTGAGCAGGAGGATCAATTAACCCA
TGAAGTCTCTCTCTCGGACACAATAGATCCAGAAATTGCTTTAGATATTTTCAAGCCGGATCCTAATTTCTTAGAAAATG
AAAGGAAGTATGAAGAATTAAAGAAGGCAATACTTGGTGAAGAATCTGAGGAAGAAGGAGATTCGGATGCAGAATCAGAG
GATGAAGATGAAGATGAAGAGTCCGACGAAGAAGAGGATGAGGAGCAAATGAAAATAAAGGATGAAACAGAGACAAACTT
AATCAACCTTCGGAGAACGATCTACCTGACGATTATGTCTAGTGTTGACTTTGAAGAAGCAGGACACAAGTTGTTGAAAA
TCAAACTAGAGCCTGGTCAGGAGATGGAGTTGTGCATAATGTTATTGGAATGCTGCAGTCAGGAAAGGACTTATCTTCGC
TACTATGGACTACTGGGACAGCGTTTTTGCATGATCAACAAAATTCATCAGGAAAACTTTGAAAAATGTTTTGTGCAGCA
GTACTCCATGATCCACCGGCTTGAAACTAACAAACTGCGTAATGTGGCCAAGTTTTTTGCTCATTTGCTCGGCACTGATG
CTCTGCCTTGGCATTGTTTGGCTTATATACGGCTGACAGAGGAAGATACGACCTCCTCTTCTCGTATTTTTATCAAGATT
CTATTCCAGGAGATGTCAGAGCACCTAGGTATCCGCTTGTTGAATGAGCGTCTTAACGACCCCACTATGCAAGAATCCTT
GGAGTCTATTTTCCCAAAAGATAATCCCAAGAACACAAGGTTTGCTATCAACTTTTTCACTTCTATCGGTTTGGGTGGAA
TTACCGAGAGCCTGCGAGAGTATCTCAAGAACATGCCAAGGCTTATCATGCAACAACAGAAGCCTGTTTCTGATTCAGAT
GAGTCTGGTAGTTCATCTGGTTCTGAATCTTCAGAATCTGAGTCGGAATCATCTTCTTCCAGTTCTGAGGAAAGTGATGA
TAGTCGAAGGAAGCAGAGGAAGAGGAGAAGATAG
ATGAGGGAGAGAAGGACTGATAAACACTGCTTTGATTTGGAGGTCCCGTCCAGTAAATCTCAAAAGCTGTGTTCTTCAAC
TTCATCAGATTCGCGGATTTGCTTTGTACTGAATCGCAGAATGATGAAGGATGTTCAGGACAAAAGCAGTGTTGAGTACC
AGAGGATGACTTGGGATGCTCTGAGGAAAAGTATCAATGGGCTGGTGAATAAAGTTAATGCAGCAAACCTCAAAAACATT
ATTCCAGAGTTGTTTGCAGAGAATTTGATCCGTGGGAGAGGGCTGTTCTGTAGATCCTGTATGAAGTCCCAAATGGCTTC
TCCCGGTTTTACTGATGTATTTGCTGCTTTGGTAGCAGTTGTTAACACCAAGTTCCCAGAAGTGGGTGATCTGTTGCTAA
GAAGGATCATACTGCAGCTGCAAAGAGCTTATAAACGTAATGATAAGCCTCAGCTGTTAGCAGCTGTCAAGTTTATTGCT
CACCTTGTAAACCAGCAAATTGTTCACGAGCTTATTGCTCTCGAACTACTTACAGTTTTGTTGGAGAAACCTACAGATGA
TAGTGTTGAAGTTGCAGTTGGTTTTGTTACAGAGTGTGGTTCAATGCTTCAGGACCTCTGTCCACGAGGATTGCATGGAA
TCTTTGAGCGGTTCCGTGGTATACTTCATGAAGGAGAAATAGATAAACGGGTTCAGTTCTTGATTGAAAGCCTCTTTGCA
TTGCGAAAAGCAAAGTTTCAGGGTTACCAAGCTGTTAGACCAGAGCTTGACCTTGTTGAGCAGGAGGATCAATTAACCCA
TGAAGTCTCTCTCTCGGACACAATAGATCCAGAAATTGCTTTAGATATTTTCAAGCCGGATCCTAATTTCTTAGAAAATG
AAAGGAAGTATGAAGAATTAAAGAAGGCAATACTTGGTGAAGAATCTGAGGAAGAAGGAGATTCGGATGCAGAATCAGAG
GATGAAGATGAAGATGAAGAGTCCGACGAAGAAGAGGATGAGGAGCAAATGAAAATAAAGGATGAAACAGAGACAAACTT
AATCAACCTTCGGAGAACGATCTACCTGACGATTATGTCTAGTGTTGACTTTGAAGAAGCAGGACACAAGTTGTTGAAAA
TCAAACTAGAGCCTGGTCAGGAGATGGAGTTGTGCATAATGTTATTGGAATGCTGCAGTCAGGAAAGGACTTATCTTCGC
TACTATGGACTACTGGGACAGCGTTTTTGCATGATCAACAAAATTCATCAGGAAAACTTTGAAAAATGTTTTGTGCAGCA
GTACTCCATGATCCACCGGCTTGAAACTAACAAACTGCGTAATGTGGCCAAGTTTTTTGCTCATTTGCTCGGCACTGATG
CTCTGCCTTGGCATTGTTTGGCTTATATACGGCTGACAGAGGAAGATACGACCTCCTCTTCTCGTATTTTTATCAAGATT
CTATTCCAGGAGATGTCAGAGCACCTAGGTATCCGCTTGTTGAATGAGCGTCTTAACGACCCCACTATGCAAGAATCCTT
GGAGTCTATTTTCCCAAAAGATAATCCCAAGAACACAAGGTTTGCTATCAACTTTTTCACTTCTATCGGTTTGGGTGGAA
TTACCGAGAGCCTGCGAGAGTATCTCAAGAACATGCCAAGGCTTATCATGCAACAACAGAAGCCTGTTTCTGATTCAGAT
GAGTCTGGTAGTTCATCTGGTTCTGAATCTTCAGAATCTGAGTCGGAATCATCTTCTTCCAGTTCTGAGGAAAGTGATGA
TAGTCGAAGGAAGCAGAGGAAGAGGAGAAGATAG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Brachypodium distachyon | BRADI4G39400 | ortholog_one2many | 1 retrogene | |
| Medicago truncatula | MTR_3g434840 | ortholog_one2many | 1 retrogene | |
| Sorghum bicolor | Sb03g029810 | ortholog_one2many | 1 retrogene | |
| Arabidopsis lyrata | scaffold_202963.1 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_slyc_47 | 77.43 | 86.10 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all Solyc04g079920.2 retrocopies