Parental gene: | EXPB4, OS10G0556100 |
| Aliases: | None |
| Description: | Expansin-B4 [Source:UniProtKB/Swiss-Prot;Acc:Q94LR4] |
| Organism: | Rice subsp. japonica (Oryza sativa japonica) |
| Coordinates: | 10:21858852..21861259(+) |
>OS10G0556100
ATGGGCTCGCTGTCCTCTCTCGCCGCCGCGGCGGTGTTTCTCTCCCTCCTCGCCGTCGGCCACTGCGCCGCCGCCGACTT
CAACGCCACCGACGCCGACGCCGACTTCGCCGGCAACGGCGTGGACTTCAACTCCAGCGACGCCGCCGTCTACTGGGGCC
CCTGGACCAAGGCCAGGGCCACCTGGTACGGCCAGCCCAACGGCGCCGGCCCCGACGACAACGGCGGCGCGTGCGGGTTC
AAGCACACCAACCAGTACCCGTTCATGTCGATGACCTCCTGCGGCAACCAGCCATTGTTCAAGGACGGCAAGGGATGCGG
CTCTTGCTACAAGATCAGATGCACCAAGGACCAGTCGTGCTCCGGCAGGTCGGAGACGGTGATCATCACCGACATGAACT
ACTACCCGGTGGCTCCGTTCCACTTCGACCTCAGCGGCACGGCGTTCGGCAGGCTCGCCAAGCCTGGCCTCAACGACAAG
CTGCGCCACTCCGGCATCATCGACATCGAGTTCACCAGGGTGCCATGCGAGTTCCCGGGGCTCAAGATCGGGTTCCACGT
GGAGGAGTACTCGAACCCTGTGTACTTCGCGGTGCTGGTGGAGTACGAGGACGGCGACGGCGACGTGGTGCAGGTGGACC
TGATGGAGTCGAAGACGGCGCACGGGCCGCCGACGGGGAGGTGGACGCCGATGAGGGAGTCGTGGGGCTCCATCTGGAGG
CTGGACACCAACCACAGGCTCCAGGCCCCCTTCTCCATCCGCATCCGCAACGAGTCCGGCAAGACGCTCGTCGCCAACAA
CGTCATCCCGGCCAACTGGAGGCCCAACACATTCTACCGCTCCTTCGTCCAGTACAGCTGA
ATGGGCTCGCTGTCCTCTCTCGCCGCCGCGGCGGTGTTTCTCTCCCTCCTCGCCGTCGGCCACTGCGCCGCCGCCGACTT
CAACGCCACCGACGCCGACGCCGACTTCGCCGGCAACGGCGTGGACTTCAACTCCAGCGACGCCGCCGTCTACTGGGGCC
CCTGGACCAAGGCCAGGGCCACCTGGTACGGCCAGCCCAACGGCGCCGGCCCCGACGACAACGGCGGCGCGTGCGGGTTC
AAGCACACCAACCAGTACCCGTTCATGTCGATGACCTCCTGCGGCAACCAGCCATTGTTCAAGGACGGCAAGGGATGCGG
CTCTTGCTACAAGATCAGATGCACCAAGGACCAGTCGTGCTCCGGCAGGTCGGAGACGGTGATCATCACCGACATGAACT
ACTACCCGGTGGCTCCGTTCCACTTCGACCTCAGCGGCACGGCGTTCGGCAGGCTCGCCAAGCCTGGCCTCAACGACAAG
CTGCGCCACTCCGGCATCATCGACATCGAGTTCACCAGGGTGCCATGCGAGTTCCCGGGGCTCAAGATCGGGTTCCACGT
GGAGGAGTACTCGAACCCTGTGTACTTCGCGGTGCTGGTGGAGTACGAGGACGGCGACGGCGACGTGGTGCAGGTGGACC
TGATGGAGTCGAAGACGGCGCACGGGCCGCCGACGGGGAGGTGGACGCCGATGAGGGAGTCGTGGGGCTCCATCTGGAGG
CTGGACACCAACCACAGGCTCCAGGCCCCCTTCTCCATCCGCATCCGCAACGAGTCCGGCAAGACGCTCGTCGCCAACAA
CGTCATCCCGGCCAACTGGAGGCCCAACACATTCTACCGCTCCTTCGTCCAGTACAGCTGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Oryza sativa indica | BGIOSGA033426 | ortholog_one2one | 1 retrogene | |
| Zea mays | GRMZM2G013002 | ortholog_one2many | 1 retrogene | |
| Oryza longistaminata | KN539761.1_FG003 | ortholog_one2one | 1 retrogene | |
| Leersia perrieri | LPERR10G14060 | ortholog_one2one | 1 retrogene | |
| Oryza barthii | OBART10G18180 | ortholog_one2one | 1 retrogene | |
| Oryza glumaepatula | OGLUM10G18290 | ortholog_one2one | 1 retrogene | |
| Oryza nivara | ONIVA10G20720 | ortholog_one2one | 1 retrogene | |
| Oryza glaberrima | ORGLA10G0133100 | ortholog_one2one | 1 retrogene | |
| Oryza rufipogon | ORUFI10G19380 | ortholog_one2one | 1 retrogene | |
| Physcomitrella patens | PP1S100_99V6 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_osat_34 | 71.49 | 87.06 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all OS10G0556100 retrocopies