Parental gene: | ARF1, ENSVPAG00000003224 |
| Aliases: | None |
| Description: | ADP-ribosylation factor 1 [Source:HGNC Symbol;Acc:652] |
| Organism: | Alpaca (Vicugna pacos) |
| Coordinates: | scaffold_19637:946..1833(-) |
>ENSVPAG00000003224
ATGGGGAATATCTTTGCGAACCTCTTCAAGGGCCTTTTTGGCAAGAAAGAAATGCGCATTCTTATGGTGGGCCTGGATGC
TGCGGGAAAGACCACCATCCTGTACAAGCTGAAGCTGGGTGAAATTGTGACCACCATTCCCACAATAGGCTTCAACGTGG
AGACTGTGGAGTACAAGAACATCAGCTTCACCGTGTGGGACGTGGGCGGCCAGGACAAGATCCGGCCTCTGTGGCGCCAC
TACTTCCAGAACACACAAGGTCTCATCTTTGTGGTTGACAGCAATGACAGAGAGCGTGTGAACGAGGCCCGCGAGGAGCT
CATGAGGATGCTGGCAGAAGATGAGCTCAGGGACGCAGTTCTGCTCGTGTTTGCTAACAAACAGGACCTCCCCAATGCCA
TGAATGCAGCCGAGATCACGGACAAGCTGGGCCTACACTCTCTGCGCCACAGGAACTGGTACATTCAGGCCACCTGTGCC
ACCAGCGGGGACGGGCTCTATGAGGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAGTGA
ATGGGGAATATCTTTGCGAACCTCTTCAAGGGCCTTTTTGGCAAGAAAGAAATGCGCATTCTTATGGTGGGCCTGGATGC
TGCGGGAAAGACCACCATCCTGTACAAGCTGAAGCTGGGTGAAATTGTGACCACCATTCCCACAATAGGCTTCAACGTGG
AGACTGTGGAGTACAAGAACATCAGCTTCACCGTGTGGGACGTGGGCGGCCAGGACAAGATCCGGCCTCTGTGGCGCCAC
TACTTCCAGAACACACAAGGTCTCATCTTTGTGGTTGACAGCAATGACAGAGAGCGTGTGAACGAGGCCCGCGAGGAGCT
CATGAGGATGCTGGCAGAAGATGAGCTCAGGGACGCAGTTCTGCTCGTGTTTGCTAACAAACAGGACCTCCCCAATGCCA
TGAATGCAGCCGAGATCACGGACAAGCTGGGCCTACACTCTCTGCGCCACAGGAACTGGTACATTCAGGCCACCTGTGCC
ACCAGCGGGGACGGGCTCTATGAGGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAGTGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000007725 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000016671 | ortholog_one2one | 10 retrogenes | |
| Ciona savignyi | ENSCSAVG00000007011 | possible_ortholog | 1 retrogene | |
| Ficedula albicollis | ENSFALG00000001088 | ortholog_one2one | 1 retrogene | |
| Gallus gallus | ENSGALG00000005393 | ortholog_one2one | 1 retrogene | |
| Latimeria chalumnae | ENSLACG00000019009 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000007020 | possible_ortholog | 6 retrogenes | |
| Macaca mulatta | ENSMMUG00000002792 | possible_ortholog | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000023645 | possible_ortholog | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000010974 | ortholog_one2one | 4 retrogenes | |
| Procavia capensis | ENSPCAG00000014202 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000000148 | ortholog_one2one | 3 retrogenes | |
| Pelodiscus sinensis | ENSPSIG00000009767 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000014599 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000009288 | ortholog_one2one | 3 retrogenes | |
| Taeniopygia guttata | ENSTGUG00000000233 | ortholog_one2one | 1 retrogene | |
| Tetraodon nigroviridis | ENSTNIG00000011685 | possible_ortholog | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000003891 | within_species_paralog | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000012114 | other_paralog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_vpac_6 | 70.83 | 92.82 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_vpac_78 | 75.18 | 77.35 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_vpac_281 | 80.36 | 91.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_vpac_328 | 90.06 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSVPAG00000003224 retrocopies