Parental gene:

YBX1, ENSTBEG00000015642

Aliases:None
Description:Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_5861:346433..389585(+)


>ENSTBEG00000015642
ATGAGCAGCGAGGCCGAGACGCAGCAGCCGCCCGCCGCCCCCCCCGCCGCCCCCGCCCTCAGCGCTGCCGACACCAAGCC
CGGCACCACGGGCAGCGGCGCAGGGAGCGGCGGCCCGGGCGACCTCACATATGCGGCGCCTGCCGGCGGGGACAAGAAGG
TCATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNACTGCCATAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGA
GACTGTGGAGTTTGATGTTGTTGAAGGAGAAAAGGGTGCGGAGGCAGCAAATGTTACAGGCCCTGGTGGAGTTCCAGTTC
AAGGCAGTAAATATGCAGCAGACCGTAACCATTATAGACGCTATCCACGTCGTAGGGGTCCTCCACGCAATTACCAGCCA
AATTACCAGAATAGTGAGAGTGGGGAAAAGAACGAGGGATCGGAGAGCGCTCCCGAAGGCCAGGCCCAACAACGCCGGCC
CTACCGCAGGCGAAGGTTCCCCCCTTACTACATGCGGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTGC
AGGGAGAAGTGATGGAGGGTGCTGACAACCAGGGTGCACGCGAGTTACAAGGTAGACCAGTGAGGCAGAATATGTATCGG
GGTTATAGACCACGATTTCGC

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000002541 possible_ortholog 4 retrogenes
retro_cfam_1312, retro_cfam_2118, retro_cfam_758, retro_cfam_91,
Callithrix jacchus ENSCJAG00000003155 possible_ortholog 6 retrogenes
retro_cjac_1261, retro_cjac_1701, retro_cjac_2718, retro_cjac_3156, retro_cjac_4172, retro_cjac_817,
Echinops telfairi ENSETEG00000004125 possible_ortholog 3 retrogenes
retro_etel_1772, retro_etel_1980, retro_etel_2134,
Felis catus ENSFCAG00000022604 possible_ortholog 6 retrogenes
retro_fcat_145, retro_fcat_1554, retro_fcat_1956, retro_fcat_241, retro_fcat_503, retro_fcat_631,
Loxodonta africana ENSLAFG00000007597 possible_ortholog 1 retrogene
retro_lafr_804,
Macaca mulatta ENSMMUG00000013136 possible_ortholog 5 retrogenes
retro_mmul_1139, retro_mmul_1423, retro_mmul_2017, retro_mmul_423, retro_mmul_861,
Oryctolagus cuniculus ENSOCUG00000028047 possible_ortholog 2 retrogenes
retro_ocun_1519, retro_ocun_1953,
Otolemur garnettii ENSOGAG00000006784 ortholog_one2one 25 retrogenes
retro_ogar_1127, retro_ogar_1246, retro_ogar_1350, retro_ogar_1371, retro_ogar_1497, retro_ogar_2011, retro_ogar_2018, retro_ogar_2302, retro_ogar_2359, retro_ogar_2607, retro_ogar_2654, retro_ogar_3170, retro_ogar_3225, retro_ogar_324, retro_ogar_3303, retro_ogar_3316, retro_ogar_3317, retro_ogar_3366, retro_ogar_3416, retro_ogar_3474, retro_ogar_448, retro_ogar_572, retro_ogar_678, retro_ogar_690, retro_ogar_753,
Sorex araneus ENSSARG00000007896 possible_ortholog 1 retrogene
retro_sara_559,
Tupaia belangeri ENSTBEG00000012570 within_species_paralog 1 retrogene
retro_tbel_996,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tbel_1183 70.89 62.35
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2. retro_tbel_1955 97.48 64.37
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3. retro_tbel_2347 94.19 62.35
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4. retro_tbel_2694 89.44 64.37
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5. retro_tbel_2702 73.83 59.11
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6. retro_tbel_2961 70.97 61.94
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7. retro_tbel_3590 80.25 64.37
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8. retro_tbel_4037 87.07 59.11
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9. retro_tbel_4478 67.48 64.37
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Download FASTA sequences of all ENSTBEG00000015642 retrocopies