Parental gene: | ENSSSCG00000022859 |
| Aliases: | None |
| Description: | None |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | GL896557.1:11611..13696(+) |
>ENSSSCG00000022859
ATGCCGGTGCAGAAGCAGACCCGTGCCGGTCAGCGGACCAGGTTCAAGGCATTTGTTGCCATTGGAGATTACAACGGGCA
CGTCGGTTTGGGTGTCAAGTGCTCTAAGGAGGTAGCCACTGCCATCCGGGGGGCCATCATTCTGGCCAAACTCTCCATTG
TCCCTGTGCGGCGAGGCTACTGGGGGAACAAGATCGGCAAGCCCCATACCGTCCCTTGCAAGGTGACTGGCCGCTGTGGC
TCCGTGCTGGTGCGCCTCATCCCTGCCCCCAGGGGCACTGGCATTGTCTCAGCCCCTGTGCCCAAGAAGCTGCTGATGAT
GGCAGGAATTGATGACTGCTACACCTCTGCCAGGGGCTGCACTGCCACCCTGGGCAACTTCGCCAAGGCCACCTTTGACG
CCATTTCCAAGACCTACAGCTATCTCACCCCTGATCTCTGGAAAGAGACAGTGTTCACCAAGTCTCCTTATCAGGAATTC
ACTGACCATCTTGTGAAGACCCACACCAGAGTTTCTGTGCAGAGGACCCAGGCTCCCGCTGTGGCCACCACATAA
ATGCCGGTGCAGAAGCAGACCCGTGCCGGTCAGCGGACCAGGTTCAAGGCATTTGTTGCCATTGGAGATTACAACGGGCA
CGTCGGTTTGGGTGTCAAGTGCTCTAAGGAGGTAGCCACTGCCATCCGGGGGGCCATCATTCTGGCCAAACTCTCCATTG
TCCCTGTGCGGCGAGGCTACTGGGGGAACAAGATCGGCAAGCCCCATACCGTCCCTTGCAAGGTGACTGGCCGCTGTGGC
TCCGTGCTGGTGCGCCTCATCCCTGCCCCCAGGGGCACTGGCATTGTCTCAGCCCCTGTGCCCAAGAAGCTGCTGATGAT
GGCAGGAATTGATGACTGCTACACCTCTGCCAGGGGCTGCACTGCCACCCTGGGCAACTTCGCCAAGGCCACCTTTGACG
CCATTTCCAAGACCTACAGCTATCTCACCCCTGATCTCTGGAAAGAGACAGTGTTCACCAAGTCTCCTTATCAGGAATTC
ACTGACCATCTTGTGAAGACCCACACCAGAGTTTCTGTGCAGAGGACCCAGGCTCCCGCTGTGGCCACCACATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 0 .27 RPM |
| SRP014902_testis | 0 .00 RPM |
| SRP018856_adipose | 0 .48 RPM |
| SRP018288_kidney | 0 .49 RPM |
| SRP018288_lung | 0 .31 RPM |
| SRP018288_liver | 0 .32 RPM |
| SRP018288_heart | 0 .50 RPM |
| SRP035408_liver | 0 .00 RPM |
| SRP035408_brain | 0 .06 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000002549 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000012360 | ortholog_one2many | 9 retrogenes | |
| Macropus eugenii | ENSMEUG00000004508 | possible_ortholog | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000016077 | possible_ortholog | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000015213 | possible_ortholog | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_280 | 78.23 | 66.85 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_sscr_293 | 78.92 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_sscr_412 | 62.61 | 61.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_sscr_486 | 84.40 | 59.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_sscr_729 | 84.32 | 99.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_sscr_803 | 75.54 | 99.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_sscr_950 | 59.79 | 52.17 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_sscr_951 | 59.79 | 52.17 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000022859 retrocopies