Parental gene:

YKT6, ENSSSCG00000016750

Aliases:None
Description:YKT6 v-SNARE homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16959]
Organism:Pig (Sus scrofa)
Coordinates:18:55855331..55865266(-)


>ENSSSCG00000016750
ATGAAGCTCTACAGCCTCAGCGTCCTCTACAAAGGCGATCCCAAGGTGGTGCTGCTCAAAGCCGCGTACGACGTGTCCTC
CTTCAGCTTCTTCCAGAGGTCCAGTGTTCAGGAATTCATGACCTTCACAAGTCAGCTGATTGTGGAGCGCTCAGCAAAAG
GCAGCAGAGCTTCTGTCAAGGAACAAGAATATCTGTGCCACGTCTACGTGAGAAACGACAGTCTTGCGGGAGTGGTCATT
GCTGACAGTGAATACCCATCCCGGGTGGCTTTTACCTTGCTGGAGAAGGTACTAGACGAATTCTCCAAGCAGGTCGACAG
GATAGAATGGCCAGTGGGATCCCCTGCCACCATCCTCTACACAGGCCTGGATGGTCACCTCAGTAGATACCAGAACCCCC
GAGAAGCTGACCCCATGAGTAAAGTGCAGGCTGAACTAGACGAGACCAAAATCATCCTGCACAACACCATGGAGTCTTTG
TTGGAGCGGGGCGAGAAGCTGGATGACCTGGTGTCCAAGTCCGAAGTGCTGGGGGTGCAGTCTAAAGCCTTCTATAAAAC
GGCCCGGAAACAAAACTCGTGCTGCGCAATCATGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 66 .10 RPM
SRP014902_testis 34 .94 RPM
SRP018856_adipose 57 .13 RPM
SRP018288_kidney 48 .46 RPM
SRP018288_lung 52 .64 RPM
SRP018288_liver 26 .39 RPM
SRP018288_heart 31 .93 RPM
SRP035408_liver 27 .92 RPM
SRP035408_brain 39 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017618 ortholog_one2one 1 retrogene
retro_amel_967,
Bos taurus ENSBTAG00000000274 ortholog_one2one 1 retrogene
retro_btau_601,
Canis familiaris ENSCAFG00000002903 ortholog_one2many 1 retrogene
retro_cfam_740,
Choloepus hoffmanni ENSCHOG00000011207 ortholog_one2one 1 retrogene
retro_chof_657,
Callithrix jacchus ENSCJAG00000008053 ortholog_one2one 2 retrogenes
retro_cjac_2394, retro_cjac_2492,
Dasypus novemcinctus ENSDNOG00000015173 ortholog_one2one 1 retrogene
retro_dnov_1364,
Dipodomys ordii ENSDORG00000016393 ortholog_one2one 1 retrogene
retro_dord_621,
Erinaceus europaeus ENSEEUG00000001247 ortholog_one2one 1 retrogene
retro_eeur_267,
Felis catus ENSFCAG00000014362 ortholog_one2one 1 retrogene
retro_fcat_1327,
Homo sapiens ENSG00000106636 ortholog_one2one 1 retrogene
retro_hsap_3687,
Gorilla gorilla ENSGGOG00000027036 ortholog_one2one 1 retrogene
retro_ggor_2493,
Macropus eugenii ENSMEUG00000014769 ortholog_one2one 1 retrogene
retro_meug_2068,
Mustela putorius furo ENSMPUG00000018200 ortholog_one2many 2 retrogenes
retro_mputfur_141, retro_mputfur_165,
Mus musculus ENSMUSG00000002741 ortholog_one2one 1 retrogene
retro_mmus_825,
Nomascus leucogenys ENSNLEG00000003689 ortholog_one2one 1 retrogene
retro_nleu_2275,
Oryctolagus cuniculus ENSOCUG00000002981 ortholog_one2many 1 retrogene
retro_ocun_15,
Pongo abelii ENSPPYG00000017595 ortholog_one2one 1 retrogene
retro_pabe_3022,
Pan troglodytes ENSPTRG00000019141 ortholog_one2one 1 retrogene
retro_ptro_2500,
Tursiops truncatus ENSTTRG00000006052 ortholog_one2one 2 retrogenes
retro_ttru_1320, retro_ttru_417,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_1063 85.98 81.82
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Download FASTA sequences of all ENSSSCG00000016750 retrocopies