Parental gene: | DEK, ENSSSCG00000001075 |
| Aliases: | None |
| Description: | DEK oncogene [Source:HGNC Symbol;Acc:2768] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 7:14644828..14676910(-) |
>ENSSSCG00000001075
ATGTCCTCCTCGGGCCCTGCTGCGGAGGGAGAGGGAACCCCCGCCCAGCCCGCGTCCGAGAAAGAGCCCGAAATGCCCGG
CCCGAGAGAGGAAAGTGAAGAGGAGGACGAGGACGACGAGGAGGAGGAAGAGGAGGAAGAGAAAGAAAAGAGTCTAATCG
TGGAAGGCAAGAGGGAAAAGAAAAAAGTAGAGAGGTTGACAATGCAAGTCTCTTCCTTACAAAGAGAGCCATTTACAATT
GCACAGGGGAAGGGACAGAAACTTTGTGAAATTGAAAGGATACACTTTTTTCTAAGTAAGAAGAAAACAGATGAGCTTAG
AAATCTACATAAGCTGCTTTATAACAGACCAGGCACAGTGTCCTCATTAAAGAAGAATGTGGGTCAGTTCAGTGGCTTTC
CATTTGAAAAAGGAAGTATCCAGTATAAGAAGAAGGAAGAAATGTTAAAAAAATTTAGAAATGCCATGTTAAAGAGCATC
TGCGAGGTTCTTGATTTGGAAAGATCAGGTGTAAATAGTGAACTGGTGAAAAGGATCTTGAATTTCTTAATGCATCCAAA
GCCTTCTGGCAAACCATTGCCAAAATCTAAAAAAACCTCTAGCAAAGGCAACAAAAAAGAACGGAATAGTTCTGGAATGG
CCAGGAAAGCTAAGCGAACCAAATGTCCTGAAATTCTTTCGGATGAATCCAGCAGCGATGAAGACGAGAAGAAAAATAAG
GAAGAGTCTTCAGATGAGGAAGATAAAGAAAGTGAAGAGGAGCCACCAAAAAAGACAGCCAAAAAAGAAAAACCCAAACA
GAAAGCCACTTCTAAAAGTAAAAAATCTGTAAAAAGTGCTAATGTTAAAAAGGCAGATAGCAGCACCACCAAGAAGAATC
AAAACAGTTCCAAAAAAGAATTTTTCAAAATTGACAATTCCAGTGCATGTTTTATAGGTAATAAAATCTTACTTTTAGAA
ACAGTAAAGAAGTTATTGGCCAGTGCTAACTTGGAGGAAGTCACAATGAAGCAGATTTGCAAAGAGGTATATGAAAGTTA
CCCTGCTTATGACTTAACTGAAAGAAAGGAGTTCATAAAAACAACTGTTAAAGAGCTGATTTCTTGA
ATGTCCTCCTCGGGCCCTGCTGCGGAGGGAGAGGGAACCCCCGCCCAGCCCGCGTCCGAGAAAGAGCCCGAAATGCCCGG
CCCGAGAGAGGAAAGTGAAGAGGAGGACGAGGACGACGAGGAGGAGGAAGAGGAGGAAGAGAAAGAAAAGAGTCTAATCG
TGGAAGGCAAGAGGGAAAAGAAAAAAGTAGAGAGGTTGACAATGCAAGTCTCTTCCTTACAAAGAGAGCCATTTACAATT
GCACAGGGGAAGGGACAGAAACTTTGTGAAATTGAAAGGATACACTTTTTTCTAAGTAAGAAGAAAACAGATGAGCTTAG
AAATCTACATAAGCTGCTTTATAACAGACCAGGCACAGTGTCCTCATTAAAGAAGAATGTGGGTCAGTTCAGTGGCTTTC
CATTTGAAAAAGGAAGTATCCAGTATAAGAAGAAGGAAGAAATGTTAAAAAAATTTAGAAATGCCATGTTAAAGAGCATC
TGCGAGGTTCTTGATTTGGAAAGATCAGGTGTAAATAGTGAACTGGTGAAAAGGATCTTGAATTTCTTAATGCATCCAAA
GCCTTCTGGCAAACCATTGCCAAAATCTAAAAAAACCTCTAGCAAAGGCAACAAAAAAGAACGGAATAGTTCTGGAATGG
CCAGGAAAGCTAAGCGAACCAAATGTCCTGAAATTCTTTCGGATGAATCCAGCAGCGATGAAGACGAGAAGAAAAATAAG
GAAGAGTCTTCAGATGAGGAAGATAAAGAAAGTGAAGAGGAGCCACCAAAAAAGACAGCCAAAAAAGAAAAACCCAAACA
GAAAGCCACTTCTAAAAGTAAAAAATCTGTAAAAAGTGCTAATGTTAAAAAGGCAGATAGCAGCACCACCAAGAAGAATC
AAAACAGTTCCAAAAAAGAATTTTTCAAAATTGACAATTCCAGTGCATGTTTTATAGGTAATAAAATCTTACTTTTAGAA
ACAGTAAAGAAGTTATTGGCCAGTGCTAACTTGGAGGAAGTCACAATGAAGCAGATTTGCAAAGAGGTATATGAAAGTTA
CCCTGCTTATGACTTAACTGAAAGAAAGGAGTTCATAAAAACAACTGTTAAAGAGCTGATTTCTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 7 .17 RPM |
| SRP014902_testis | 27 .44 RPM |
| SRP018856_adipose | 33 .17 RPM |
| SRP018288_kidney | 82 .35 RPM |
| SRP018288_lung | 124 .53 RPM |
| SRP018288_liver | 39 .18 RPM |
| SRP018288_heart | 66 .56 RPM |
| SRP035408_liver | 122 .59 RPM |
| SRP035408_brain | 78 .26 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000010184 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000018188 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000004470 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000019763 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000007750 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_203 | 80.29 | 55.71 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000001075 retrocopies