Parental gene:

VAMP4, ENSSARG00000001709

Aliases:None
Description:vesicle-associated membrane protein 4 [Source:HGNC Symbol;Acc:12645]
Organism:Shrew (Sorex araneus)
Coordinates:GeneScaffold_2213:4834..24010(-)


>ENSSARG00000001709
ATGCCTCCCAAGTTCAAGCGCCACAACGATGACGACGTCACCGGATCCGTGAAGAGTGAAAGGAGGAATCTTCTCGAAGA
TGACTCAGACGAAGAAGAGGACTTTTTCCTGAGGGGGCCTTCTGGACCAAGATTTGGACCCAGGAATGATAAGATCAAGC
ATGTTCAGAATCAGGTGGATGAAGTCATCGATGTCATGCAAGAAAATATCACGAAGGTCATCGAAAGGGGGGAGAGACTA
GATGAACTCCAGGACAAATCAGAGAGCTTATCGGATAACGCAGCCGCTTTCAGCAACAGATCCAAACAGCTTCGACGGCA
CATGTGGTGGCGCGGATGCAAGATAAAAGCTATCATGGCTTTGGTCGCCGTGGCCCTCTTGCTAGTGATCATCATTCTTA
TATTTGTGAAGTACCGCACCTGA

Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000124 possible_ortholog 4 retrogenes
retro_chof_2225, retro_chof_2402, retro_chof_513, retro_chof_58,
Macropus eugenii ENSMEUG00000011226 ortholog_one2one 13 retrogenes
retro_meug_1053, retro_meug_115, retro_meug_1257, retro_meug_1406, retro_meug_1489, retro_meug_1587, retro_meug_163, retro_meug_2075, retro_meug_2154, retro_meug_319, retro_meug_386, retro_meug_569, retro_meug_75,
Monodelphis domestica ENSMODG00000003811 ortholog_one2many 1 retrogene
retro_mdom_268,
Otolemur garnettii ENSOGAG00000026745 possible_ortholog 1 retrogene
retro_ogar_3369,
Sarcophilus harrisii ENSSHAG00000017179 ortholog_one2one 2 retrogenes
retro_shar_584, retro_shar_747,
Tupaia belangeri ENSTBEG00000010829 ortholog_one2one 2 retrogenes
retro_tbel_2607, retro_tbel_4488,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sara_79 82.61 62.86
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2. retro_sara_234 82.61 62.86
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Download FASTA sequences of all ENSSARG00000001709 retrocopies