Parental gene: | ACTR3B, ENSPTRG00000019897 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 7:153922014..154017618(+) |
>ENSPTRG00000019897
ATGGCAGGCTCCCTGCCTCCCTGCGTGGTGGACTGTGGCACCGGGTATACCAAGCTTGGCTACGCAGGCAACACTGAGCC
CCAGTTCATTATTCCTTCATGTATTGCCATCAGAGAGTCAGCAAAGGTAGTTGACCAAGCCCAAAGGAGAGTGTTGAGGG
GAGTTGATGACCTTGACTTTTTCATAGGAGATGAAGCCATCGATAAACCTACGTATGCTACAAAGTGGCCGATACGACAT
GGAATCATTGAAGACTGGGATCTTATGGAAAGGTTCATGGAGCAAGTGGTTTTTAAATATCTTCGAGCTGAACCTGAGGA
CCATTATTTTTTAATGACAGAACCTCCACTCAATACACCAGAAAACAGAGAGTATCTTGCAGAAATTATGTTTGAATCAT
TTAACGTACCAGGACTCTACATTGCAGTTCAGGCAGTGCTGGCCTTGGCGGCATCTTGGACATCTCGACAAGTGGGTGAA
CGTACGTTAACGGGGATAGTCATTGACAGCGGAGATGGAGTCACCCATGTTATCCCAGTGGCAGAAGGTTATGTAATTGG
AAGCTGCATCAAACACATCCCGATTGCAGGTAGAGATATTACGTATTTCATTCAACAGCTGCTAAGGGAGAGGGAGGTGG
GAATCCCTCCTGAGCAGTCACTGGAGACCGCAAAAGCCATTAAGGAGAAATACTGTTACATTTGCCCCGATATAGTCAAG
GAATTTGCCAAGTATGATGTGGATCCCCGGAAGTGGATCAAACAGTACACGGGTATCAATGCGATCAACCAGAAGAAGTT
TGTTATAGACGTTGGTTACGAAAGATTCCTGGGACCTGAAATATTCTTTCACCCGGAGTTTGCCAACCCAGACTTTATGG
AGTCCATCTCAGATGTTGTTGATGAAGTAATACAGAACTGCCCCATCGATGTGCGGCGCCCGCTGTATAAGAATGTCGTA
CTCTCAGGAGGCTCCACCATGTTCAGGGATTTCGGACGCCGACTGCAGAGGGATTTGAAGAGAGTGGTGGATGCTAGGCT
GAGGCTCAGCGAGGAGCTCAGTGGCGGGAGGATCAAGCCGAAGCCTGTGGAGGTCCAGGTGGTCACGCATCACATGCAGC
GCTACGCCGTGTGGTTTGGAGGCTCCATGCTGGCCTCGACTCCCGAGTTCTTTCAGGTCTGCCACACCAAGAAGGACTAT
GAAGAGTACGGGCCCAGCATCTGCCGCCACAACCCCGTCTTTGGAGTCATGTCCTAG
ATGGCAGGCTCCCTGCCTCCCTGCGTGGTGGACTGTGGCACCGGGTATACCAAGCTTGGCTACGCAGGCAACACTGAGCC
CCAGTTCATTATTCCTTCATGTATTGCCATCAGAGAGTCAGCAAAGGTAGTTGACCAAGCCCAAAGGAGAGTGTTGAGGG
GAGTTGATGACCTTGACTTTTTCATAGGAGATGAAGCCATCGATAAACCTACGTATGCTACAAAGTGGCCGATACGACAT
GGAATCATTGAAGACTGGGATCTTATGGAAAGGTTCATGGAGCAAGTGGTTTTTAAATATCTTCGAGCTGAACCTGAGGA
CCATTATTTTTTAATGACAGAACCTCCACTCAATACACCAGAAAACAGAGAGTATCTTGCAGAAATTATGTTTGAATCAT
TTAACGTACCAGGACTCTACATTGCAGTTCAGGCAGTGCTGGCCTTGGCGGCATCTTGGACATCTCGACAAGTGGGTGAA
CGTACGTTAACGGGGATAGTCATTGACAGCGGAGATGGAGTCACCCATGTTATCCCAGTGGCAGAAGGTTATGTAATTGG
AAGCTGCATCAAACACATCCCGATTGCAGGTAGAGATATTACGTATTTCATTCAACAGCTGCTAAGGGAGAGGGAGGTGG
GAATCCCTCCTGAGCAGTCACTGGAGACCGCAAAAGCCATTAAGGAGAAATACTGTTACATTTGCCCCGATATAGTCAAG
GAATTTGCCAAGTATGATGTGGATCCCCGGAAGTGGATCAAACAGTACACGGGTATCAATGCGATCAACCAGAAGAAGTT
TGTTATAGACGTTGGTTACGAAAGATTCCTGGGACCTGAAATATTCTTTCACCCGGAGTTTGCCAACCCAGACTTTATGG
AGTCCATCTCAGATGTTGTTGATGAAGTAATACAGAACTGCCCCATCGATGTGCGGCGCCCGCTGTATAAGAATGTCGTA
CTCTCAGGAGGCTCCACCATGTTCAGGGATTTCGGACGCCGACTGCAGAGGGATTTGAAGAGAGTGGTGGATGCTAGGCT
GAGGCTCAGCGAGGAGCTCAGTGGCGGGAGGATCAAGCCGAAGCCTGTGGAGGTCCAGGTGGTCACGCATCACATGCAGC
GCTACGCCGTGTGGTTTGGAGGCTCCATGCTGGCCTCGACTCCCGAGTTCTTTCAGGTCTGCCACACCAAGAAGGACTAT
GAAGAGTACGGGCCCAGCATCTGCCGCCACAACCCCGTCTTTGGAGTCATGTCCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 52 .96 RPM |
| SRP007412_cerebellum | 23 .66 RPM |
| SRP007412_heart | 5 .74 RPM |
| SRP007412_kidney | 11 .04 RPM |
| SRP007412_liver | 11 .03 RPM |
| SRP007412_testis | 20 .66 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000007730 | ortholog_one2many | 5 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000019288 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000133627 | ortholog_one2one | 7 retrogenes | |
| Macropus eugenii | ENSMEUG00000004885 | ortholog_one2one | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000015688 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000018206 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000012388 | within_species_paralog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_420 | 76.52 | 77.75 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1137 | 72.06 | 64.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1479 | 77.44 | 77.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2007 | 78.05 | 77.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_2952 | 75.30 | 77.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_2961 | 75.00 | 77.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_3052 | 75.30 | 77.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_3281 | 72.06 | 64.59 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000019897 retrocopies