Parental gene:

TCP1, ENSPTRG00000018760

Aliases:None
Description:Pan troglodytes t-complex 1 (TCP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001246572]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:161540090..161551580(-)


>ENSPTRG00000018760
ATGGAGGGGCCTTTGTCCGTGTTCGGTGACCGCAGCACTGGGGAAACGATCCGCTCCCAGAACGTTATGGCTGCAGCTTC
GATTGCCAATATTGTAAAAAGTTCTCTTGGTCCAGTTGGCTTGGATAAAATGTTGGTGGATGATATTGGTGATGTAACCA
TTACTAACGATGGTGCAACCATCCTGAAGTTACTGGAGGTAGAACATCCTGCAGCTAAAGTTCTTTGTGAGCTGGCTGAT
CTGCAAGACAAAGAAGTTGGAGATGGAACTACTTCAGTGGTTATTATTGCAGCAGAACTCCTAAAAAATGCAGATGAATT
AGTCAAACAGAAAATTCATCCCACATCAGTTATTAGTGGCTATCGACTTGCTTGCAAGGAAGCAGTGCGTTATATCAATG
AAAACCTAATTGTTAACACAGATGAACTGGGAAGAGATTGCCTGATTAATGCTGCTAAGACATCCATGTCTTCCAAAATC
ATTGGAATAAATGGTGATTTCTTTGCTAACATGGTAGTAGATGCTGTACTTGCTATTAAATACACAGACATAAGAGGCCA
GCCACGCTATCCAGTCAACTCTGTTAATATTTTGAAAGCCCATGGGAGAAGTCAAATGGAGAGTATGCTCATCAGTGGCT
ATGCACTCAACTGTGTGGTGGGATCCCAGGGCATGCCCAAGAGAATCGTAAATGCAAAAATTGCTTGCCTTGACTTCAGC
CTGCAAAAAACAAAAATGAAGCTTGGTGTACAGGTGGTCATTACAGACCCTGAAAAACTGGACCAAATTAGACAGAGAGA
ATCAGATATCACCAAGGAGAGAATTCAGAAGATCCTGGCAACTGGTGCCAATGTTATTCTAACCACTGGTGGAATTGATG
ATATGTGTCTGAAGTATTTTGTGGAGGCTGGTGCTATGGCAGTTAGAAGAGTTTTAAAAAGGGACCTTAAACGCATTGCC
AAAGCTTCTGGAGCAACTATTCTGTCAACCCTGGCCAATTTGGAAGGTGAAGAAACTTTTGAAGCTGCAATGTTGGGACA
GGCAGAAGAAGTGGTACAGGAGAGAATTTGTGATGATGAGCTGATCTTAATCAAAAATACTAAGGCTCGTACATCTGCAT
CGATTATCTTACGTGGGGCAAATGATTTCATGTGTGATGAGATGGAGCGCTCTTTACATGATGCACTTTGTGTAGTGAAG
AGAGTTTTGGAGTCAAAATCTGTGGTTCCCGGTGGGGGTGCTGTAGAAGCAGCCCTTTCCATATACCTTGAAAACTATGC
AACCAGCATGGGGTCTCGGGAACAGCTTGCGATTGCAGAGTTTGCAAGATCACTTCTTGTTATTCCCAATACACTAGCAG
TTAATGCTGCCCAGGACTCCACAGATCTGGTTGCAAAATTAAGAGCTTTTCATAATGAGGCCCAGGTTAACCCAGAACGT
AAAAATCTAAAATGGATTGGTCTTGATTTGAGCAATGGTAAACCTCGAGACAACAAACAAGCAGGGGTGTTTGAACCAAC
CATAGTTAAAGTTAAGAGTTTGAAATTTGCAACAGAAGCTGCAATCACCATTCTTCGAATTGATGATCTTATTAAATTAC
ATCCAGAAAGTAAAGATGATAAACATGGAAGTTACGAAGATGCTGTTCACTCTGGAGCCCTTAATGATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 67 .48 RPM
SRP007412_cerebellum 96 .47 RPM
SRP007412_heart 67 .88 RPM
SRP007412_kidney 88 .99 RPM
SRP007412_liver 88 .74 RPM
SRP007412_testis 295 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015405 ortholog_one2one 1 retrogene
retro_amel_828,
Callithrix jacchus ENSCJAG00000011792 ortholog_one2one 2 retrogenes
retro_cjac_1867, retro_cjac_2193,
Equus caballus ENSECAG00000017953 ortholog_one2one 1 retrogene
retro_ecab_798,
Homo sapiens ENSG00000120438 ortholog_one2one 1 retrogene
retro_hsap_3722,
Gorilla gorilla ENSGGOG00000014063 ortholog_one2one 1 retrogene
retro_ggor_2514,
Microcebus murinus ENSMICG00000007998 ortholog_one2one 1 retrogene
retro_mmur_795,
Macaca mulatta ENSMMUG00000012846 ortholog_one2many 1 retrogene
retro_mmul_1696,
Oryctolagus cuniculus ENSOCUG00000013847 ortholog_one2one 1 retrogene
retro_ocun_1577,
Pongo abelii ENSPPYG00000017146 ortholog_one2one 1 retrogene
retro_pabe_3135,
Pteropus vampyrus ENSPVAG00000005316 ortholog_one2one 1 retrogene
retro_pvam_522,
Sorex araneus ENSSARG00000002463 ortholog_one2one 1 retrogene
retro_sara_624,
Sarcophilus harrisii ENSSHAG00000015128 ortholog_one2many 1 retrogene
retro_shar_830,
Ictidomys tridecemlineatus ENSSTOG00000005572 ortholog_one2one 1 retrogene
retro_itri_1274,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2617 87.79 76.44
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Download FASTA sequences of all ENSPTRG00000018760 retrocopies