Parental gene: | TMX1, ENSPTRG00000006339 |
| Aliases: | TMX1, TXNDC1 |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 14:50179068..50196680(+) |
>ENSPTRG00000006339
ATGGCGCCCTCCGGGAGTCTTGCAGTTCCCCTGGCAGTCCTGGTGCTGTTGCTTTGGGGTGCTCCCTGGACGCACGGGCG
GCGGAGCAACGTTCGCGTCATCACGGACGAGAACTGGAGAGAACTGCTGGAAGGAGACTGGATGATAGAATTTTATGCCC
CGTGGTGCCCTGCTTGTCAAAATCTTCAACCGGAATGGGAAAGTTTTGCTGAATGGGGAGAAGATCTTGAGGTTAATATT
GCGAAAGTAGATGTCACAGAGCAGCCAGGACTGAGTGGACGGTTTATCATAACTGCTCTTCCTACTATTTATCATTGTAA
AGATGGTGAATTTAGGCGCTATCAGGGTCCAAGGACTAAGAAGGACTTCATAAACTTTATAAGTGATAAAGAGTGGAAGA
GTATTGAGCCTGTTTCATCATGGTTTGGTCCAGGTTCTGTTCTGATGAGTAGTATGTCAGCACTCTTTCAGCTATCTATG
TGGATCAGGACTTGCCATAACTACTTTATTGAAGACCTTGGATTGCCAGTGTGGGGATCATATACTGTTTTTGCTTTAGC
AACTCTGTTTTCCGGACTGTTATTAGGACTTTGTATGATATTTGTGGCAGATTGCCTTTGTCCTTCAAAAAAGCGCAGAC
CACAGCCATACCCATACCCTTCAAAAAAATTATTATCAGAATCTGCACAACCTTTGAAAAAAGTGGAGGAGGAACAAGAG
GCGGATGAAGAAGATGTTTCAGAAGAAGAAGCTGGAAGTAAAGAAGGAACAAACAAAGACTTTCCACAGAATGCCATAAG
ACAACGCTCTCTGGGTCCAACATTAGCCACAGATAAATCCTAG
ATGGCGCCCTCCGGGAGTCTTGCAGTTCCCCTGGCAGTCCTGGTGCTGTTGCTTTGGGGTGCTCCCTGGACGCACGGGCG
GCGGAGCAACGTTCGCGTCATCACGGACGAGAACTGGAGAGAACTGCTGGAAGGAGACTGGATGATAGAATTTTATGCCC
CGTGGTGCCCTGCTTGTCAAAATCTTCAACCGGAATGGGAAAGTTTTGCTGAATGGGGAGAAGATCTTGAGGTTAATATT
GCGAAAGTAGATGTCACAGAGCAGCCAGGACTGAGTGGACGGTTTATCATAACTGCTCTTCCTACTATTTATCATTGTAA
AGATGGTGAATTTAGGCGCTATCAGGGTCCAAGGACTAAGAAGGACTTCATAAACTTTATAAGTGATAAAGAGTGGAAGA
GTATTGAGCCTGTTTCATCATGGTTTGGTCCAGGTTCTGTTCTGATGAGTAGTATGTCAGCACTCTTTCAGCTATCTATG
TGGATCAGGACTTGCCATAACTACTTTATTGAAGACCTTGGATTGCCAGTGTGGGGATCATATACTGTTTTTGCTTTAGC
AACTCTGTTTTCCGGACTGTTATTAGGACTTTGTATGATATTTGTGGCAGATTGCCTTTGTCCTTCAAAAAAGCGCAGAC
CACAGCCATACCCATACCCTTCAAAAAAATTATTATCAGAATCTGCACAACCTTTGAAAAAAGTGGAGGAGGAACAAGAG
GCGGATGAAGAAGATGTTTCAGAAGAAGAAGCTGGAAGTAAAGAAGGAACAAACAAAGACTTTCCACAGAATGCCATAAG
ACAACGCTCTCTGGGTCCAACATTAGCCACAGATAAATCCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 6 .27 RPM |
| SRP007412_cerebellum | 11 .51 RPM |
| SRP007412_heart | 9 .21 RPM |
| SRP007412_kidney | 22 .60 RPM |
| SRP007412_liver | 25 .24 RPM |
| SRP007412_testis | 17 .07 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000015041 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000014626 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000011305 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000006893 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000016496 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000002780 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000139921 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000009768 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000013251 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000001901 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012362 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000003980 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005810 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_2522 | 83.27 | 99.64 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2695 | 79.37 | 67.14 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000006339 retrocopies