Parental gene: | SUCLA2, ENSPTRG00000005859 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 13:47646346..47706885(-) |
>ENSPTRG00000005859
ATGGCGGCCTCCATGTTCTACGGCAGGCTAGTGGCCGTGGCCACCCTTCGGAACCACCGGCCTCGGACGGCCCAGCGGGC
CGCTGCTCAGGTTCTGGGAAGTTCTGGATTGTTTAATAACCATGGACTCCAAGTACAGCAGCAACAGCAAAGGAATCTGT
CACTACATGAATACATGAGTATGGAATTATTGCAAGAAGCTGGTGTCTCCGTTCCCAAAGGATATGTGGCAAAGTCACCA
GATGAAGCTTATGCAATTGCCAAAAAATTAGGTTCAAAAGATGTTGTGATAAAGGCACAGGTTTTAGCTGGTGGTAGAGG
AAAAGGAACATTTGAAAGTGGCCTCAAAGGAGGAGTGAAGATAGTTTTCTCTCCAGAAGAAGCAAAAGCTGTTTCTTCAC
AAATGATTGGGAAAAAATTGTTTACCAAGCAAACGGGAGAAAAGGGCAGAATATGCAATCAAGTATTGGTCTGTGAGCGA
AAATACCCCAGGAGAGAGTACTACTTTGCAATAACAATGGAAAGGTCATTTCAAGGTCCTGTATTAATAGGAAGTTCACA
TGGTGGTGTCAACATTGAAGATGTTGCTGCTGAGACTCCTGAAGCTATAATTAAAGAACCTATTGATATTGAAGAAGGCA
TCAAAAAGGAACAAGCTCTCCAGCTTGCACAGAAGATGGGATTTCCACCTAATATTGTGGAATCAGCAGCAGAAAACATG
GTCAAGCTTTACAGCCTCTTTCTGAAATACGATGCAACCATGATAGAAATAAATCCAATGGTGGAAGATTCAGATGGAGC
TGTATTGTGTATGGATGCAAAGATCAATTTTGACTCTAATTCAGCCTATCGCCAAAAGAAAATCTTTGATCTACAGGACT
GGACCCAGGAAGATGAAAGGGACAAAGATGCTGCTAAGGCAAATCTCAACTACATTGGCCTCGATGGAAATATAGGCTGC
CTAGTAAATGGTGCTGGTTTGGCTATGGCCACAATGGATATAATAAAACTTCATGGAGGGACTCCAGCCAACTTCCTTGA
TGTTGGTGGTGGTGCTACAGTCCATCAAGTAACAGAAGCATTTAAGCTTATCACTTCAGATAAAAAGGTACTGGCTATTC
TGGTCAACATTTTTGGAGGAATCATGCGCTGTGATGTTATTGCACAGGGTATAGTCATGGCAGTAAAAGACTTGGAAATT
AAAATACCTGTTGTGGTACGGTTACAAGGTACACGAGTCGATGATGCTAAGGCACTGATAGCGGACAGTGGACTTAAAAT
ACTTGCTTGTGATGACTTGGATGAAGCTGCTAGAATGGTTGTAAAGCTCTCTGAAATAGTGACCTTAGCGAAGCAAGCAC
ATGTGGATGTGAAATTTCAGTTGCCAATATGA
ATGGCGGCCTCCATGTTCTACGGCAGGCTAGTGGCCGTGGCCACCCTTCGGAACCACCGGCCTCGGACGGCCCAGCGGGC
CGCTGCTCAGGTTCTGGGAAGTTCTGGATTGTTTAATAACCATGGACTCCAAGTACAGCAGCAACAGCAAAGGAATCTGT
CACTACATGAATACATGAGTATGGAATTATTGCAAGAAGCTGGTGTCTCCGTTCCCAAAGGATATGTGGCAAAGTCACCA
GATGAAGCTTATGCAATTGCCAAAAAATTAGGTTCAAAAGATGTTGTGATAAAGGCACAGGTTTTAGCTGGTGGTAGAGG
AAAAGGAACATTTGAAAGTGGCCTCAAAGGAGGAGTGAAGATAGTTTTCTCTCCAGAAGAAGCAAAAGCTGTTTCTTCAC
AAATGATTGGGAAAAAATTGTTTACCAAGCAAACGGGAGAAAAGGGCAGAATATGCAATCAAGTATTGGTCTGTGAGCGA
AAATACCCCAGGAGAGAGTACTACTTTGCAATAACAATGGAAAGGTCATTTCAAGGTCCTGTATTAATAGGAAGTTCACA
TGGTGGTGTCAACATTGAAGATGTTGCTGCTGAGACTCCTGAAGCTATAATTAAAGAACCTATTGATATTGAAGAAGGCA
TCAAAAAGGAACAAGCTCTCCAGCTTGCACAGAAGATGGGATTTCCACCTAATATTGTGGAATCAGCAGCAGAAAACATG
GTCAAGCTTTACAGCCTCTTTCTGAAATACGATGCAACCATGATAGAAATAAATCCAATGGTGGAAGATTCAGATGGAGC
TGTATTGTGTATGGATGCAAAGATCAATTTTGACTCTAATTCAGCCTATCGCCAAAAGAAAATCTTTGATCTACAGGACT
GGACCCAGGAAGATGAAAGGGACAAAGATGCTGCTAAGGCAAATCTCAACTACATTGGCCTCGATGGAAATATAGGCTGC
CTAGTAAATGGTGCTGGTTTGGCTATGGCCACAATGGATATAATAAAACTTCATGGAGGGACTCCAGCCAACTTCCTTGA
TGTTGGTGGTGGTGCTACAGTCCATCAAGTAACAGAAGCATTTAAGCTTATCACTTCAGATAAAAAGGTACTGGCTATTC
TGGTCAACATTTTTGGAGGAATCATGCGCTGTGATGTTATTGCACAGGGTATAGTCATGGCAGTAAAAGACTTGGAAATT
AAAATACCTGTTGTGGTACGGTTACAAGGTACACGAGTCGATGATGCTAAGGCACTGATAGCGGACAGTGGACTTAAAAT
ACTTGCTTGTGATGACTTGGATGAAGCTGCTAGAATGGTTGTAAAGCTCTCTGAAATAGTGACCTTAGCGAAGCAAGCAC
ATGTGGATGTGAAATTTCAGTTGCCAATATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 52 .16 RPM |
| SRP007412_cerebellum | 40 .80 RPM |
| SRP007412_heart | 90 .79 RPM |
| SRP007412_kidney | 56 .54 RPM |
| SRP007412_liver | 8 .67 RPM |
| SRP007412_testis | 19 .81 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000014610 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000009278 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000014961 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000136143 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000008224 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000007539 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000001488 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000002948 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000007452 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005352 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1581 | 86.80 | 53.35 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1615 | 71.31 | 75.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2337 | 86.81 | 93.09 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000005859 retrocopies