Parental gene: | ARHGAP42, ENSPTRG00000004204 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 11:98522542..98834902(+) |
>ENSPTRG00000004204
ATGGGGCTGCCCACTCTGGAGTTCAGCGATTCCTACTTGGACAGCCCAGATTTCAGGGAGCGCTTGCAGTGTCACGAGAT
TGAGCTGGAGCGAACCAACAAGTTCATCAAGGAGCTCATTAAGGACGGCTCTCTGCTCATTGGGGCGTTGAGGAATCTGT
CTATGGCAGTGCAGAAATTTTCCCAGTCATTGCAAGATTTCCAGTTTGAATGTATTGGTGATGCTGAAACAGATGATGAA
ATTAGTATTGCTCAGTCACTAAAAGAATTTGCAAGACTACTCATTGCAGTAGAAGAAGAAAGGCGAAGACTGATCCAAAA
CGCTAATGATGTATTAATTGCACCACTTGAGAAATTTCGAAAAGAACAGATAGGTGCAGCAAAAGATGGAAAGAAGAAGT
TTGACAAAGAGAGTGAAAAATATTACTCTATCCTTGAAAAGCATTTAAATTTGTCCGCAAAGAAAAAGGAGTCTCATTTA
CAAGAGGCAGATACACAAATTGACCGAGAACATCAGAACTTCTATGAAGCATCATTAGAATATGTCTTTAAAATTCAAGA
GGTCCAAGAAAAAAAGAAGTTTGAATTTGTTGAACCGCTTTTGTCATTTCTTCAGGGCTTATTTACTTTTTACCATGAGG
GATATGAACTTGCCCAGGAATTTGCACCGTATAAGCAACAGCTGCAGTTCAACTTGCAGAATACAAGGAATAATTTTGAA
AGTACTCGACAAGAGGTAGAGCGGTTGATGCAAAGGATGAAATCTGCCAACCAGGACTACAGACCACCCAGCCAGTGGAC
GATGGAAGGCTATCTGTATGTCCAGGAGAAACGACCGCTTGGTTTTACATGGATTAAACATTATTGTACATATGATAAGG
GAAGTAAAACATTTACAATGAGTGTTTCAGAAATGAAATCCAGTGGGAAAATGAATGGCCTTGTTACTAGCTCACCGGAA
ATGTTTAAATTAAAATCTTGTATCCGACGAAAGACAGATTCAATTGACAAACGATTCTGCTTTGACATAGAAGTAGTTGA
AAGGCATGGGATCATCACGTTACAGGCCTTCTCAGAAGCTAATAGGAAACTCTGGCTTGAAGCCATGGATGGGAAGGAAC
CGATTTATACTCTGCCTGCCATTATAAGCAAGAAAGAAGAAATGTATTTGAATGAAGCAGGGTTCAACTTTGTGAGAAAA
TGCATTCAAGCTGTGGAAACAAGAGGTATCACCATTTTAGGACTCTACCGAATAGGAGGAGTGAACTCCAAAGTTCAAAA
ACTCATGAATACCACATTTTCTCCTAAATCCCCTCCTGATATTGATATTGATATTGAACTGTGGGACAATAAGACGATAA
CAAGTGGGCTGAAAAACTACCTCAGGTGCCTTGCAGAACCACTGATGACTTACAAGTTGCACAAAGATTTTATCATTGCT
GTTAAATCTGATGACCAAAACTACAGGGTGGAGGCTGTACATGCATTGGTGCACAAATTGCCGGAGAAAAACAGAGAGAT
GCTGGACATCTTAATAAAGCATCTGGTCAAAGTATCACTACACAGCCAACAAAATCTCATGACTGTCTCAAATCTTGGTG
TCATATTTGGCCCAACTCTAATGAGAGCACAGGAAGAAACTGTGGCTGCTATGATGAATATTAAATTTCAGAATATTGTG
GTAGAAATTCTGATAGAGCACTATGAAAAGATTTTTCATACTGCTCCAGACCCAAGCATTCCTCTTCCTCAGCCTCAGTC
TCGATCTGGATCCCGAAGGACGCGAGCAATCTGCCTCTCTACAGGGTCTAGGAAGCCCAGAGGGAGGTATACTCCATGCC
TGGCTGAACCTGATAGTGACTCCTATAGCAGCAGCCCAGACAGCACACCTATGGGGAGCATTGAGTCACTCTCTTCTCAT
TCCTCTGAACAAAATAGCACTACAAAGTCAGCTTCCTGCCAGCCCAGGGAGAAATCTGGAGGGATTCCTTGGATTGCAAC
CCCGTCATCTTCCAATGGACAGAAAAGCCTTGGTCTCTGGACAACTAGTCCTGAATCAAGTTCCAGAGAAGATGCGACCA
AGACAGATGCAGAATCAGACTGCCAGAGTGTTGCTTCGGTCACTAGCCCAGGAGACGTTTCCCCACCCATAGACCTAGTC
AAGAAAGAGCCTTATGGGCTTTCAGGACTGAAAAGAGCTTCTGCTTCTTCTCTCAGATCCATCTCTGCAGCTGAAGGAAA
CAAGAGCTACAGTGGATCTATTCAAAGCTTAACTTCTGTAGGTTCCAAGGAGACACCCAAAGCTTCACCAAACCCAGACC
TGCCTCCGAAAATGTGCAGGAGATTAAGACTAGACACTGCCTCAAGCAATGGCTATCAGCGTCCTGGCTCAGTAGTGGCA
GCAAAAGCTCAACTGTTTGAAAATGTTGGTTCACCTAAACCAGTTTCTTCTGGGCGCCAAGCCAAAGCCATGTACTCCTG
TAAAGCAGAGCACAGTCATGAGCTTTCCTTCCCACAAGGAGCGATATTTTCTAATGTGTACCCATCAGTGGAACCAGGAT
GGTTAAAGGCAACTTATGAAGGCAAAACAGGACTAGTTCCAGAAAATTATGTTGTCTTCCTCTAA
ATGGGGCTGCCCACTCTGGAGTTCAGCGATTCCTACTTGGACAGCCCAGATTTCAGGGAGCGCTTGCAGTGTCACGAGAT
TGAGCTGGAGCGAACCAACAAGTTCATCAAGGAGCTCATTAAGGACGGCTCTCTGCTCATTGGGGCGTTGAGGAATCTGT
CTATGGCAGTGCAGAAATTTTCCCAGTCATTGCAAGATTTCCAGTTTGAATGTATTGGTGATGCTGAAACAGATGATGAA
ATTAGTATTGCTCAGTCACTAAAAGAATTTGCAAGACTACTCATTGCAGTAGAAGAAGAAAGGCGAAGACTGATCCAAAA
CGCTAATGATGTATTAATTGCACCACTTGAGAAATTTCGAAAAGAACAGATAGGTGCAGCAAAAGATGGAAAGAAGAAGT
TTGACAAAGAGAGTGAAAAATATTACTCTATCCTTGAAAAGCATTTAAATTTGTCCGCAAAGAAAAAGGAGTCTCATTTA
CAAGAGGCAGATACACAAATTGACCGAGAACATCAGAACTTCTATGAAGCATCATTAGAATATGTCTTTAAAATTCAAGA
GGTCCAAGAAAAAAAGAAGTTTGAATTTGTTGAACCGCTTTTGTCATTTCTTCAGGGCTTATTTACTTTTTACCATGAGG
GATATGAACTTGCCCAGGAATTTGCACCGTATAAGCAACAGCTGCAGTTCAACTTGCAGAATACAAGGAATAATTTTGAA
AGTACTCGACAAGAGGTAGAGCGGTTGATGCAAAGGATGAAATCTGCCAACCAGGACTACAGACCACCCAGCCAGTGGAC
GATGGAAGGCTATCTGTATGTCCAGGAGAAACGACCGCTTGGTTTTACATGGATTAAACATTATTGTACATATGATAAGG
GAAGTAAAACATTTACAATGAGTGTTTCAGAAATGAAATCCAGTGGGAAAATGAATGGCCTTGTTACTAGCTCACCGGAA
ATGTTTAAATTAAAATCTTGTATCCGACGAAAGACAGATTCAATTGACAAACGATTCTGCTTTGACATAGAAGTAGTTGA
AAGGCATGGGATCATCACGTTACAGGCCTTCTCAGAAGCTAATAGGAAACTCTGGCTTGAAGCCATGGATGGGAAGGAAC
CGATTTATACTCTGCCTGCCATTATAAGCAAGAAAGAAGAAATGTATTTGAATGAAGCAGGGTTCAACTTTGTGAGAAAA
TGCATTCAAGCTGTGGAAACAAGAGGTATCACCATTTTAGGACTCTACCGAATAGGAGGAGTGAACTCCAAAGTTCAAAA
ACTCATGAATACCACATTTTCTCCTAAATCCCCTCCTGATATTGATATTGATATTGAACTGTGGGACAATAAGACGATAA
CAAGTGGGCTGAAAAACTACCTCAGGTGCCTTGCAGAACCACTGATGACTTACAAGTTGCACAAAGATTTTATCATTGCT
GTTAAATCTGATGACCAAAACTACAGGGTGGAGGCTGTACATGCATTGGTGCACAAATTGCCGGAGAAAAACAGAGAGAT
GCTGGACATCTTAATAAAGCATCTGGTCAAAGTATCACTACACAGCCAACAAAATCTCATGACTGTCTCAAATCTTGGTG
TCATATTTGGCCCAACTCTAATGAGAGCACAGGAAGAAACTGTGGCTGCTATGATGAATATTAAATTTCAGAATATTGTG
GTAGAAATTCTGATAGAGCACTATGAAAAGATTTTTCATACTGCTCCAGACCCAAGCATTCCTCTTCCTCAGCCTCAGTC
TCGATCTGGATCCCGAAGGACGCGAGCAATCTGCCTCTCTACAGGGTCTAGGAAGCCCAGAGGGAGGTATACTCCATGCC
TGGCTGAACCTGATAGTGACTCCTATAGCAGCAGCCCAGACAGCACACCTATGGGGAGCATTGAGTCACTCTCTTCTCAT
TCCTCTGAACAAAATAGCACTACAAAGTCAGCTTCCTGCCAGCCCAGGGAGAAATCTGGAGGGATTCCTTGGATTGCAAC
CCCGTCATCTTCCAATGGACAGAAAAGCCTTGGTCTCTGGACAACTAGTCCTGAATCAAGTTCCAGAGAAGATGCGACCA
AGACAGATGCAGAATCAGACTGCCAGAGTGTTGCTTCGGTCACTAGCCCAGGAGACGTTTCCCCACCCATAGACCTAGTC
AAGAAAGAGCCTTATGGGCTTTCAGGACTGAAAAGAGCTTCTGCTTCTTCTCTCAGATCCATCTCTGCAGCTGAAGGAAA
CAAGAGCTACAGTGGATCTATTCAAAGCTTAACTTCTGTAGGTTCCAAGGAGACACCCAAAGCTTCACCAAACCCAGACC
TGCCTCCGAAAATGTGCAGGAGATTAAGACTAGACACTGCCTCAAGCAATGGCTATCAGCGTCCTGGCTCAGTAGTGGCA
GCAAAAGCTCAACTGTTTGAAAATGTTGGTTCACCTAAACCAGTTTCTTCTGGGCGCCAAGCCAAAGCCATGTACTCCTG
TAAAGCAGAGCACAGTCATGAGCTTTCCTTCCCACAAGGAGCGATATTTTCTAATGTGTACCCATCAGTGGAACCAGGAT
GGTTAAAGGCAACTTATGAAGGCAAAACAGGACTAGTTCCAGAAAATTATGTTGTCTTCCTCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 1 .84 RPM |
| SRP007412_cerebellum | 2 .04 RPM |
| SRP007412_heart | 6 .82 RPM |
| SRP007412_kidney | 9 .05 RPM |
| SRP007412_liver | 6 .32 RPM |
| SRP007412_testis | 44 .26 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000005829 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000165895 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000011397 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000003799 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000002365 | other_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_892 | 89.31 | 62.93 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1641 | 89.17 | 62.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1692 | 89.86 | 62.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_3083 | 89.13 | 62.93 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000004204 retrocopies