Parental gene:

LDHAL6A, ENSPTRG00000003423

Aliases:None
Description:lactate dehydrogenase A-like 6A [Source:HGNC Symbol;Acc:28335]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:11:18245071..18269005(+)


>ENSPTRG00000003423
ATGGCAACTATCAAGAGTGAACTTATTAAGAATTTCGCGGAAGAGGAGGCCATTCATCACAATAAGATCTCCATTGTAGG
AACTGGATCGGTTGGTGTGGCTTGTGCTATCAGCATCTTATTAAAAGGTTTGAGTGATGAACTTGTCCTTGTGGATGTTG
ATGAAGGCAAACTGAAGGGTGAGACAATGGATCTTCAACATGGCAGCCCTTTTATGAAAATGCCAAATATTGTCTCCAGC
AAAGATTACCTGGTCACTGCAAACTCCAATCTAGTGATTATCACAGCAGGTGCACGCCAGAAAAAAGGAGAAACACGCCT
TGATTTAGTCCAGCGAAATGTATCCATCTTTAAATTAATGATTCCCAATATTACCCAGTACAGTCCTCACTGCAAACTGC
TTATTGTTACTAATCCAGTGGATATCTTAACTTATGTAGCCTGGAAGTTGAGTGGATTTCCCAAAAACCGTGTTATTGGA
AGTGGTTGTAATCTGGACTCTGCTCGTTTTCGTTACTTTATTGGGCAAAGGCTTGGCATCCACTCTGAAAGCTGTCATGG
GCTGATCCTTGGAGAGCATGGCGACTCAAGTGTTCCTGTGTGGAGTGGTGTGAACATTGCTGGCGTCCCTCTGAAGGATC
TGAACCCAGATATAGGAACTGATAAAGATCCTGAGCAGTGGGAAAATGTCCACAAAAAAGTGATTTCCAGTGGCTATGAG
ATGGTCAAAATGAAAGGTTATACTTCTTGGGGCATTAGCCTATCTGTAGCTGATTTAACAGAAAGTATTTTGAAGAATCT
TAGGAGAGTGCATCCAGTTTCTACCCTAAGTAAGGGCCTCTATGGAATAAATGAAGACATATTCCTTAGTGTCCCATGTA
TCCTGGGAGAGAATGGTATCACAGACCTCATAAAAGTAAAACTGACTCTTGAAGAGGAGGCCTGCTTGCAAAAGAGTGCG
GAAACACTTTGGGAAATTCAGAAGGAGCTCAAGCTTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1 .91 RPM
SRP007412_cerebellum 2 .90 RPM
SRP007412_heart 0 .61 RPM
SRP007412_kidney 0 .65 RPM
SRP007412_liver 0 .07 RPM
SRP007412_testis 2 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007067 ortholog_one2one 2 retrogenes
retro_cjac_164, retro_cjac_2180,
Homo sapiens ENSG00000166800 ortholog_one2one 2 retrogenes
retro_hsap_42, retro_hsap_905,
Macaca mulatta ENSMMUG00000014614 ortholog_one2one 2 retrogenes
retro_mmul_1111, retro_mmul_261,
Nomascus leucogenys ENSNLEG00000017780 ortholog_one2one 2 retrogenes
retro_nleu_29, retro_nleu_378,
Otolemur garnettii ENSOGAG00000009261 ortholog_one2one 1 retrogene
retro_ogar_2662,
Pongo abelii ENSPPYG00000003435 ortholog_one2one 2 retrogenes
retro_pabe_203, retro_pabe_779,
Pan troglodytes ENSPTRG00000003421 within_species_paralog 5 retrogenes
retro_ptro_1540, retro_ptro_1618, retro_ptro_2039, retro_ptro_259, retro_ptro_2875,
Pan troglodytes ENSPTRG00000004762 within_species_paralog 1 retrogene
retro_ptro_3237,
Tarsius syrichta ENSTSYG00000008062 possible_ortholog 4 retrogenes
retro_tsyr_1811, retro_tsyr_2064, retro_tsyr_2071, retro_tsyr_731,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_62 82.53 100.00
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Download FASTA sequences of all ENSPTRG00000003423 retrocopies