Parental gene:

HSPA5, ENSPTRG00000000563

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:9:124327301..124332402(-)


>ENSPTRG00000000563
ATGAAGCTCTCCCTGGTGGCCGCGATGCTGCTGCTGCTCAGCGCGGCGCGGGCCGAGGAGGAGGACAAGAAGGAGGACGT
GGGCACGGTGGTCGGCATCGACCTGGGGACCACCTACTCCTGCGTCGGCGTGTTCAAGAACGGCCGCGTGGAGATCATCG
CCAACGATCAGGGCAACCGCATCACGCCGTCCTATGTGGCCTTCACTCCTGAAGGGGAACGTCTGATTGGCGATGCCGCC
AAGAACCAGCTCACCTCCAACCCCGAGAACACGGTCTTTGACGCCAAGCGGCTCATCGGCCGCACGTGGAATGACCCGTC
TGTGCAGCAGGACATCAAGTTCTTGCCGTTCAAGGTGGTTGAAAAGAAAACTAAACCATACATTCAAGTTGATATTGGAG
GTGGGCAAACAAAGACATTTGCTCCTGAAGAAATTTCTGCCATGGTTCTCACTAAAATGAAAGAAACCGCTGAGGCTTAT
TTGGGAAAGAAGGTTACCCATGCAGTTGTTACTGTACCAGCCTATTTTAATGATGCCCAACGCCAAGCAACCAAAGACGC
TGGAACTATTGCTGGCCTAAATGTTATGAGGATCATCAACGAGCCTACAGCAGCTGCTATTGCTTATGGCCTGGATAAGA
GGGAGGGGGAGAAGAACATCCTGGTGTTTGACCTGGGTGGCGGAACCTTCGATGTGTCTCTTCTCACCATTGACAATGGT
GTCTTCGAAGTTGTGGCCACTAATGGAGATACTCATCTGGGTGGAGAAGACTTTGACCAGCGTGTCATGGAACACTTCAT
CAAACTGTACAAAAAGAAGACTGGCAAAGATGTCAGGAAAGACAATAGAGCTGTGCAGAAACTCCGGCGCGAGGTAGAAA
AGGCCAAACGGGCCCTGTCTTCTCAACATCAAGCAAGAATTGAAATTGAGTCCTTCTATGAAGGAGAAGACTTTTCTGAG
ACCCTGACTCGGGCCAAATTTGAAGAGCTCAACATGGATCTGTTCCGGTCTACTATGAAGCCCGTCCAGAAAGTGTTGGA
AGATTCTGATTTGAAGAAGTCTGATATTGATGAAATTGTTCTTGTTGGTGGCTCGACTCGAATTCCAAAGATTCAGCAAC
TGGTTAAAGAGTTCTTCAATGGCAAGGAACCATCCCGTGGCATAAACCCAGATGAAGCTGTAGCGTATGGTGCTGCTGTC
CAGGCTGGTGTGCTCTCTGGTGATCAAGATACAGGTGACCTGGTACTGCTTGATGTATGTCCCCTTACACTTGGTATTGA
AACTGTGGGAGGTGTCATGACCAAACTGATTCCAAGGAACACAGTGGTGCCTACCAAGAAGTCTCAGATCTTTTCTACAG
CTTCTGATAATCAACCAACCGTTACAATCAAGGTCTATGAAGGTGAAAGACCCCTGACAAAAGACAATCATCTTCTGGGT
ACATTTGATCTGACTGGAATTCCTCCTGCTCCTCGTGGGGTCCCACAGATTGAAGTCACCTTTGAGATAGATGTGAATGG
TATTCTTCGAGTGACAGCTGAAGACAAGGGTACAGGGAACAAAAATAAGATCACAATCACCAATGACCAGAATCGCCTGA
CACCTGAAGAAATCGAAAGGATGGTTAATGATGCTGAGAAGTTTGCTGAGGAAGACAAAAAGCTCAAGGAGCGCATTGAT
ACTAGAAATGAGTTGGAAAGCTATGCCTATTCTCTAAAGAATCAGATTGGAGATAAAGAAAAGCTGGGAGGTAAACTGTC
CTCTGAAGATAAGGAGACCATGGAAAAAGCTGTAGAAGAAAAGATTGAATGGCTGGAAAGCCACCAAGATGCTGACATTG
AAGACTTCAAAGCTAAGAAGAAGGAACTGGAAGAAATTGTTCAACCAATTATCAGCAAACTCTATGGAAGTGCAGGCCCT
CCCCCAACTGGTGAAGAGGATACAGCAGAAAAAGATGAGTTGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 122 .55 RPM
SRP007412_cerebellum 142 .68 RPM
SRP007412_heart 166 .63 RPM
SRP007412_kidney 321 .59 RPM
SRP007412_liver 1051 .75 RPM
SRP007412_testis 531 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006880 ortholog_one2one 1 retrogene
retro_cjac_2221,
Homo sapiens ENSG00000044574 ortholog_one2one 1 retrogene
retro_hsap_3005,
Gallus gallus ENSGALG00000001000 ortholog_one2one 1 retrogene
retro_ggal_21,
Gorilla gorilla ENSGGOG00000026879 ortholog_one2one 1 retrogene
retro_ggor_2082,
Macropus eugenii ENSMEUG00000016702 ortholog_one2one 1 retrogene
retro_meug_522,
Mus musculus ENSMUSG00000026864 ortholog_one2one 1 retrogene
retro_mmus_1299,
Nomascus leucogenys ENSNLEG00000017348 ortholog_one2one 1 retrogene
retro_nleu_751,
Otolemur garnettii ENSOGAG00000006786 ortholog_one2one 1 retrogene
retro_ogar_2901,
Pongo abelii ENSPPYG00000019609 ortholog_one2one 1 retrogene
retro_pabe_2491,
Pan troglodytes ENSPTRG00000004404 within_species_paralog 5 retrogenes
retro_ptro_1743, retro_ptro_2507, retro_ptro_272, retro_ptro_3259, retro_ptro_3264,
Pan troglodytes ENSPTRG00000017290 within_species_paralog 1 retrogene
retro_ptro_1680,
Ictidomys tridecemlineatus ENSSTOG00000011243 ortholog_one2one 4 retrogenes
retro_itri_1686, retro_itri_1687, retro_itri_1689, retro_itri_1879,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2033 85.98 100.00
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Download FASTA sequences of all ENSPTRG00000000563 retrocopies