Parental gene:

SNRPC, ENSPPYG00000029902

Aliases:None
Description:small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157]
Organism:Orangutan (Pongo abelii)
Coordinates:6:34768565..34777931(+)


>ENSPPYG00000029902
ATGCCCAAGTTTTATTGTGACTACTGCGATACATACCTCACCCATGACTCTCCATCTGTGAGAAAGACACACTGCAGTGG
AAGGAAACACAAAGAGAATGTAAAAGACTATTATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGACAAAACAA
CGGCTGCATTTCAACAAGGAAAGATACCTCCTACTCCATTCTCTGCTCCTCCTCCTGCAGGGGCGATGATACCACCTCCC
CCCAGCCTTCGTAAGTTTAAACTTTTAATCTTAAGGGGTGTGACGGGGCAGGCTGTC

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 4 .20 RPM
SRP007412_cerebellum 6 .93 RPM
SRP007412_heart 7 .71 RPM
SRP007412_kidney 5 .63 RPM
SRP007412_liver 4 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000963 possible_ortholog 7 retrogenes
retro_amel_1237, retro_amel_1249, retro_amel_149, retro_amel_1522, retro_amel_1523, retro_amel_592, retro_amel_988,
Canis familiaris ENSCAFG00000001231 ortholog_one2one 3 retrogenes
retro_cfam_348, retro_cfam_402, retro_cfam_409,
Callithrix jacchus ENSCJAG00000015321 possible_ortholog 16 retrogenes
retro_cjac_1009, retro_cjac_1015, retro_cjac_1064, retro_cjac_1750, retro_cjac_1937, retro_cjac_2014, retro_cjac_2395, retro_cjac_2456, retro_cjac_2785, retro_cjac_3056, retro_cjac_3110, retro_cjac_400, retro_cjac_4010, retro_cjac_617, retro_cjac_770, retro_cjac_873,
Cavia porcellus ENSCPOG00000008563 possible_ortholog 3 retrogenes
retro_cpor_1529, retro_cpor_1540, retro_cpor_288,
Felis catus ENSFCAG00000005876 possible_ortholog 12 retrogenes
retro_fcat_1008, retro_fcat_1088, retro_fcat_1265, retro_fcat_1545, retro_fcat_1599, retro_fcat_161, retro_fcat_1664, retro_fcat_1814, retro_fcat_446, retro_fcat_578, retro_fcat_627, retro_fcat_922,
Gorilla gorilla ENSGGOG00000012499 possible_ortholog 7 retrogenes
retro_ggor_1169, retro_ggor_1333, retro_ggor_1364, retro_ggor_1981, retro_ggor_2577, retro_ggor_2699, retro_ggor_2842,
Macropus eugenii ENSMEUG00000009300 possible_ortholog 1 retrogene
retro_meug_1718,
Myotis lucifugus ENSMLUG00000002488 possible_ortholog 8 retrogenes
retro_mluc_1246, retro_mluc_1627, retro_mluc_2020, retro_mluc_2099, retro_mluc_2144, retro_mluc_2332, retro_mluc_735, retro_mluc_962,
Macaca mulatta ENSMMUG00000000869 possible_ortholog 9 retrogenes
retro_mmul_1148, retro_mmul_1161, retro_mmul_1343, retro_mmul_1465, retro_mmul_1573, retro_mmul_1626, retro_mmul_2016, retro_mmul_2314, retro_mmul_678,
Monodelphis domestica ENSMODG00000013904 ortholog_one2one 1 retrogene
retro_mdom_22,
Mustela putorius furo ENSMPUG00000003210 possible_ortholog 7 retrogenes
retro_mputfur_1233, retro_mputfur_1260, retro_mputfur_1396, retro_mputfur_374, retro_mputfur_441, retro_mputfur_519, retro_mputfur_531,
Nomascus leucogenys ENSNLEG00000008392 possible_ortholog 2 retrogenes
retro_nleu_2129, retro_nleu_99,
Oryctolagus cuniculus ENSOCUG00000026668 possible_ortholog 3 retrogenes
retro_ocun_1019, retro_ocun_184, retro_ocun_196,
Otolemur garnettii ENSOGAG00000008755 possible_ortholog 9 retrogenes
retro_ogar_1040, retro_ogar_130, retro_ogar_1763, retro_ogar_183, retro_ogar_2434, retro_ogar_3064, retro_ogar_3322, retro_ogar_3377, retro_ogar_697,
Procavia capensis ENSPCAG00000016885 possible_ortholog 1 retrogene
retro_pcap_34,
Pongo abelii ENSPPYG00000017272 within_species_paralog 4 retrogenes
retro_pabe_1271, retro_pabe_3066, retro_pabe_3225, retro_pabe_915,
Pan troglodytes ENSPTRG00000018070 possible_ortholog 6 retrogenes
retro_ptro_1037, retro_ptro_1283, retro_ptro_1937, retro_ptro_2249, retro_ptro_2606, retro_ptro_2883,
Pteropus vampyrus ENSPVAG00000015597 possible_ortholog 1 retrogene
retro_pvam_1213,
Sarcophilus harrisii ENSSHAG00000000945 possible_ortholog 1 retrogene
retro_shar_112,
Ictidomys tridecemlineatus ENSSTOG00000013786 possible_ortholog 3 retrogenes
retro_itri_1278, retro_itri_1374, retro_itri_861,
Tarsius syrichta ENSTSYG00000011216 possible_ortholog 6 retrogenes
retro_tsyr_1198, retro_tsyr_1475, retro_tsyr_1746, retro_tsyr_185, retro_tsyr_260, retro_tsyr_690,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2367 76.54 81.82
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2. retro_pabe_3397 77.65 84.85
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3. retro_pabe_3524 76.19 83.84
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Download FASTA sequences of all ENSPPYG00000029902 retrocopies