Parental gene: | LAPTM4B, ENSPPYG00000018771 |
| Aliases: | None |
| Description: | lysosomal protein transmembrane 4 beta [Source:HGNC Symbol;Acc:13646] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 8:104172601..104226654(+) |
>ENSPPYG00000018771
ATCATCAATGCTGTGGTACTATTGATTTTACTGAGTGCCCTGGCTGATCCAAATCAGTATCACTTTTCAAGTTCTGAACT
GGGAGGTGACTTTGAGTTCATGGATGATGCCAACATGTGCATTGCCATTGCGATTTCTCTTCTCATGATCCTGATATGTG
CTATGGCTACTTACGGAGCGTACAAGCAACGCGCAGCCTGGATCATCCCATTCTTCTGTTACCAGATCTTTGACTTTGCC
CTGAACATGTTGGTTGCAATCACCGTGCTTATTTATCCAAACTCCATTCAGGAATACATACGGCAACTGCCTCCTAATTT
TCCCTACAGAGATGATGTCATGTCAGTGAATCCTACCTGTTTGGTCCTTATTATTCTTCTGTTTATTAGCATTATCTTGA
CTTTTAAGGGTTACTTGATTAGCTGTGTTTGGAACTGCTACCGATACATCAATGGCAGGAACTCCTCTGATGTCCTGGTT
TATGTTACCAGCAATGACACTACGGTGCTGCTACCCCCGTATGATGATGCCACTGTGAATGGTACTGCCAAGGAGCCGCC
GCCACCTTACGTGTCTGCCTAA
ATCATCAATGCTGTGGTACTATTGATTTTACTGAGTGCCCTGGCTGATCCAAATCAGTATCACTTTTCAAGTTCTGAACT
GGGAGGTGACTTTGAGTTCATGGATGATGCCAACATGTGCATTGCCATTGCGATTTCTCTTCTCATGATCCTGATATGTG
CTATGGCTACTTACGGAGCGTACAAGCAACGCGCAGCCTGGATCATCCCATTCTTCTGTTACCAGATCTTTGACTTTGCC
CTGAACATGTTGGTTGCAATCACCGTGCTTATTTATCCAAACTCCATTCAGGAATACATACGGCAACTGCCTCCTAATTT
TCCCTACAGAGATGATGTCATGTCAGTGAATCCTACCTGTTTGGTCCTTATTATTCTTCTGTTTATTAGCATTATCTTGA
CTTTTAAGGGTTACTTGATTAGCTGTGTTTGGAACTGCTACCGATACATCAATGGCAGGAACTCCTCTGATGTCCTGGTT
TATGTTACCAGCAATGACACTACGGTGCTGCTACCCCCGTATGATGATGCCACTGTGAATGGTACTGCCAAGGAGCCGCC
GCCACCTTACGTGTCTGCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 36 .71 RPM |
| SRP007412_cerebellum | 18 .97 RPM |
| SRP007412_heart | 49 .79 RPM |
| SRP007412_kidney | 63 .38 RPM |
| SRP007412_liver | 48 .35 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000016959 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000031235 | ortholog_one2many | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000008926 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000003756 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000000512 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000020448 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000003124 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_279 | 90.91 | 62.69 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2311 | 85.94 | 65.80 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000018771 retrocopies