Parental gene:

SAMM50, ENSPPYG00000011918

Aliases:None
Description:sorting and assembly machinery component 50 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:24276]
Organism:Orangutan (Pongo abelii)
Coordinates:22:39320190..39367023(+)


>ENSPPYG00000011918
ATGGGGACTGTGCATGCCCGGAGTTTGGAGCCTCTTCCATCAAGTGGACCTGATTTTGGAGGATTAGGAGAAGAAGCTGA
ATTTGTTGAAGTTGAACCTGAAGCTAAACAGGAAATTCTTGAAAACAAAGATGTGGTTGTTCAACATGTTCATTTTGATG
GACTTGGAAGGACTAAAGATGATATCATCATTTGTGAAATTGGAGATGTTTTCAAGGCCAAAAACCTAATTGAGGTAATG
CGGAAATCTCATGAAGCCCGTGAAAAATTGCTCCGTCTTGGAATTTTTAGACAAGTGGATATTTTGATTGACACATGTCA
AGGTGATGATGCACTTCCAAATGGGTTAGACGTTACCTTTGAAGTAACTGAATTGAGGAGATTAACAGGCAGTTATAACA
CCATGGTTGGAAACAATGAAGGCAGTATGGTACTTGGCCTCAAGCTCCCTAATCTTCTTGGTCGTGCAGAAAAGGTGACC
TTTCAGTTTTCCTATGGAACAAAAGAAACGTCGTATGGCCTGTCCTTCTTCAAACCACGGCCCGGAAACTTCGAAAGAAA
TTTCTCTGTAAACTTATATAAAGTTACTGGACAGTTCCCTTGGAGCTCACTGCGGGAGACGGACAGAGGAATGTCAGCTG
AGTACAGTTTTCCCATATGGAAGACCAGCCACACTGTCAAGTGGGAAGGCGTGTGGCGAGAACTGGGCTGCCTCTCCAGG
ACGGCGTCATTTGCTGTTCGAAAAGAAAGCGGACATTCACTGAAGTCATCTCTTTCGCACGCCATGGTCATCGATTCTCG
GAATTCTTCCATCTTACCAAGAAGAGGTGCTTTGCTGAAAGTTAACCAGGAACTGGCAGGCTACACTGGCGGGGATGTGA
GCTTCATCAAAGAAGATTTTGAACTTCAGTTGAACAAGCAACTCATATTCGATTCAGTTTTTTCAGCATCTCTCTGGGGC
GGAATGTTGGTGCCCATTGGTGATAAGCCGTCAAGCATTGCTGATAGGTTTTACCTCGGAGGACCCACAAGCGTCCGTGG
ATTCAGCATGCACAGCATCGGGCCACAGAGCGAAGGAGACTACCTAGGTGGAGAAGCGTACTGGGCCGGCGGCCTGCACC
TCTACACCCCGTTACCTTTCCGGCCAGGCCAGGGTGGCTTTGGAGAACTTTTCCGAACACACTTCTTTCTCAACGCAGGA
AACCTCTGCAACCTCAACTATGGGGAGGGCCCCAAAGCTCATATTCGTAAGCTGGCTGAGTGCATCCGCTGGTCGTACGG
GGCCGGGATTGTCCTCAGGCTTGGCAACATTGCTCGGTTGGAACTTAATTACTGCATCCCCATGGGAGTACAGACAGGCG
ACAGGATATGTGATGGCGTCCAGTTTGGAGCTGGGATAAGGTTCCTGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 42 .91 RPM
SRP007412_cerebellum 36 .97 RPM
SRP007412_heart 44 .22 RPM
SRP007412_kidney 61 .65 RPM
SRP007412_liver 27 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015070 ortholog_one2one 2 retrogenes
retro_cjac_2277, retro_cjac_605,
Homo sapiens ENSG00000100347 ortholog_one2one 1 retrogene
retro_hsap_4233,
Macaca mulatta ENSMMUG00000015446 ortholog_one2one 1 retrogene
retro_mmul_1152,
Nomascus leucogenys ENSNLEG00000015693 ortholog_one2one 1 retrogene
retro_nleu_1035,
Pan troglodytes ENSPTRG00000014483 ortholog_one2one 1 retrogene
retro_ptro_2876,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3404 64.91 83.58
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Download FASTA sequences of all ENSPPYG00000011918 retrocopies