Parental gene:

RBM39, ENSPPYG00000010963

Aliases:None
Description:RNA-binding protein 39 [Source:UniProtKB/Swiss-Prot;Acc:Q5RC80]
Organism:Orangutan (Pongo abelii)
Coordinates:20:32934514..32974566(-)


>ENSPPYG00000010963
ATGGCAGACGATATTGATATTGAAGCAATGCTTGAGGCTCCTTACAAGAAGGATGAGAACAAGTTGAGCAGTGCCAACGG
CCATGAAGAACGTAGCAAAAAGAGGAAAAAAAGCAAGAGCAGAAGTCGTAGTCATGAACGAAAGAGAAGCAAAAGTAAGG
AACGGAAGCGAAGTAGAGATAGAGAAAGGAAAAAGAGCAAAAGCCGTGAAAGAAAACGAAGTAGAAGCAAAGAGAGGCGA
CGGAGCCGCTCAAGAAGTCGAGATCGAAGATTTAGAGGCCGCTACAGAAGTCCTTACTCCGGACCAAAATTTAACAGTGC
CATCCGAGGAAAGATTGGGTTGCCTCATAGCATCAAATTAAGCAGACGACGTTCCCGAAGCAAAAGTCCATTCAGAAAAG
ACAAGAGCCCTGTGAGGGAACCTATTGATAATTTAACTCCTGAGGAAAGAGATGCAAGGACAGTCTTCTGTATGCAGCTG
GCGGCAAGAATTCGACCAAGGGATTTGGAAGAGTTTTTCTCTACAGTAGGAAAGGTTCGAGATGTGAGGATGATTTCTGA
CAGAAATTCAAGACGTTCCAAGGGAATTGCTTATGTGGAGTTCGTCGATGTTAGCTCAGTGCCTCTAGCAATAGGATTAA
CTGGCCAACGAGTTTTAGGCGTGCCAATCATAGTACAGGCATCACAGGCAGAAAAAAACAGAGCTGCAGCAATGGCAAAC
AATTTACAAAAGGGAAGTGCTGGACCTATGAGGCTTTATGTGGGCTCATTACACTTCAACATAACTGAAGATATGCTTCG
TGGGATCTTTGAGCCTTTTGGAAGGATTGAAAGTATCCAGCTGATGATGGACAGTGAAACTGGTCGATCCAAGGGATATG
GATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCAGGAAGACCA
ATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGAC
TGGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCACCAG
CAGCACAGCAAGCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAA
ACAAGACTTTCCCAGCAGACTGAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAGTGTTTCCA
ACTCTCTAACATGTTTAACCCTCAAACAGAAGAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAAT
GTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCA
ATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCAGCATATGTACC
TCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAACTACTGGTTCCAAGTAGACGATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 107 .37 RPM
SRP007412_cerebellum 219 .61 RPM
SRP007412_heart 84 .62 RPM
SRP007412_kidney 129 .54 RPM
SRP007412_liver 118 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000017535 ortholog_one2one 1 retrogene
retro_cjac_2199,
Homo sapiens ENSG00000131051 ortholog_one2one 1 retrogene
retro_hsap_4679,
Macaca mulatta ENSMMUG00000031284 possible_ortholog 1 retrogene
retro_mmul_2491,
Mus musculus ENSMUSG00000027620 ortholog_one2one 3 retrogenes
retro_mmus_1512, retro_mmus_2792, retro_mmus_2793,
Otolemur garnettii ENSOGAG00000011227 possible_ortholog 1 retrogene
retro_ogar_267,
Ochotona princeps ENSOPRG00000002183 ortholog_one2one 2 retrogenes
retro_opri_55, retro_opri_913,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3634 89.87 100.00
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Download FASTA sequences of all ENSPPYG00000010963 retrocopies