Parental gene: | PCED1A, ENSPPYG00000010833 |
| Aliases: | None |
| Description: | PC-esterase domain containing 1A [Source:HGNC Symbol;Acc:16212] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 20:25468863..25474118(+) |
>ENSPPYG00000010833
ATGGTCTTCTGTCTGTCGAGCGAGGAGCCGCGCCGCCCGCTGCGAAGCGACATGGTCCACTTCCAGGCCTCGGAAGTCCA
GCAGCTGCTACACAACAAGTTCGTGGTCATCTTGGGGGACTCCATTCAGAGGGCTGTGTACAAGGACCTGGTGCTCTTGC
TCCAGAAAGACTCACTGCTCACAGCTGCCCAGCTGAAAGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCT
GGGGGCCAGCTGGGCGAGCTGCACAACGGGACACAGTACCGTGAGGTCCGCCAGTTCTGCTCGGGCTCTGGCCACCACCT
TGTGCGCTTCTACTTCCTCACTCGTGTTTACTCCGAGTACCTTGAGGATGTTCTGGAAGAGCTGACATATGGACCTGCCC
CGGACCTGGTGATCATCAACTCCTGCCTCTGGGATCTCTCCAGATATGGTCGCTGCTCAATGGAGAGCTACCGGGAGAAC
CTGGAGCGGGTGTTTGTGCGCATGGACCAAGTATTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCGATGCCCCTCGG
GGAGCGTATCACTGGGGGTTTCCTCCTGCCAGAGCTCCAGCCCCTGGCAGGCTCCCTGCGGCGGGATGTGGTTGAAGGGA
ACTTCTACAGTGCTACGCTGGCCGGGGACCACTGCTTCGATGTCCTAGACCTCCACTTTCACTTCCGGCATGCAGTACAG
CACCGTCATCGGGATGGTGTCCACTGGGACCAACATGCGCACCGCCACCTCTCACACCTGCTTCTGAGCCATGTGGCTGA
CGCCTGGGGCGTGGAGCTGCCCAAGCGTGGCTATCCCCCTGACCCGTGGATTGAGGACTGGGCAGAGATGAATCATCCAT
TCCAGGGAAGCCATAGGCAGACCCCAGACTTCGGGGAGCACCTGGCCTTGCTCCCACCCCCACCTTCTTCTTTGCCTCCT
CCCATGCCTTTTCCCTACCCGCTTCCTCAGCCCTCGCCACCTCCCCTCTTCCCACCCCTGCCCCAGGATACCCCTTTTTT
CCCAGGCCAGCCTTTCCCACCCCATGAATTCTTCAACTATAATCCAGTGGAGGACTTCTCGATGCCATCCCACTTAGGAT
GTGGCCCTGGAGTGAACTTTGTGCCTGGCCCTCTGCCACCTCCAATCCCTGGCCCTAATCCCCATGGTCAGCACTGGGGC
CCAGTGGTCCACCGGGGGATGCCACGCTATGTTCCTAACAGCCCCTACCATGTGCGGAGAATGGGGGGGCCCTGCAGGCA
GCGGCTCAGACACTCAGAGAGACTGATCCACACATACAAACTGGACAGACGGCCTCCTGCCCATTCGGGGACATGGCCTG
GGTAG
ATGGTCTTCTGTCTGTCGAGCGAGGAGCCGCGCCGCCCGCTGCGAAGCGACATGGTCCACTTCCAGGCCTCGGAAGTCCA
GCAGCTGCTACACAACAAGTTCGTGGTCATCTTGGGGGACTCCATTCAGAGGGCTGTGTACAAGGACCTGGTGCTCTTGC
TCCAGAAAGACTCACTGCTCACAGCTGCCCAGCTGAAAGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCT
GGGGGCCAGCTGGGCGAGCTGCACAACGGGACACAGTACCGTGAGGTCCGCCAGTTCTGCTCGGGCTCTGGCCACCACCT
TGTGCGCTTCTACTTCCTCACTCGTGTTTACTCCGAGTACCTTGAGGATGTTCTGGAAGAGCTGACATATGGACCTGCCC
CGGACCTGGTGATCATCAACTCCTGCCTCTGGGATCTCTCCAGATATGGTCGCTGCTCAATGGAGAGCTACCGGGAGAAC
CTGGAGCGGGTGTTTGTGCGCATGGACCAAGTATTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCGATGCCCCTCGG
GGAGCGTATCACTGGGGGTTTCCTCCTGCCAGAGCTCCAGCCCCTGGCAGGCTCCCTGCGGCGGGATGTGGTTGAAGGGA
ACTTCTACAGTGCTACGCTGGCCGGGGACCACTGCTTCGATGTCCTAGACCTCCACTTTCACTTCCGGCATGCAGTACAG
CACCGTCATCGGGATGGTGTCCACTGGGACCAACATGCGCACCGCCACCTCTCACACCTGCTTCTGAGCCATGTGGCTGA
CGCCTGGGGCGTGGAGCTGCCCAAGCGTGGCTATCCCCCTGACCCGTGGATTGAGGACTGGGCAGAGATGAATCATCCAT
TCCAGGGAAGCCATAGGCAGACCCCAGACTTCGGGGAGCACCTGGCCTTGCTCCCACCCCCACCTTCTTCTTTGCCTCCT
CCCATGCCTTTTCCCTACCCGCTTCCTCAGCCCTCGCCACCTCCCCTCTTCCCACCCCTGCCCCAGGATACCCCTTTTTT
CCCAGGCCAGCCTTTCCCACCCCATGAATTCTTCAACTATAATCCAGTGGAGGACTTCTCGATGCCATCCCACTTAGGAT
GTGGCCCTGGAGTGAACTTTGTGCCTGGCCCTCTGCCACCTCCAATCCCTGGCCCTAATCCCCATGGTCAGCACTGGGGC
CCAGTGGTCCACCGGGGGATGCCACGCTATGTTCCTAACAGCCCCTACCATGTGCGGAGAATGGGGGGGCCCTGCAGGCA
GCGGCTCAGACACTCAGAGAGACTGATCCACACATACAAACTGGACAGACGGCCTCCTGCCCATTCGGGGACATGGCCTG
GGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 34 .61 RPM |
| SRP007412_cerebellum | 33 .32 RPM |
| SRP007412_heart | 5 .90 RPM |
| SRP007412_kidney | 50 .38 RPM |
| SRP007412_liver | 18 .36 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000003863 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000025475 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000016497 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000002886 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000132635 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000016578 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000028662 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000005200 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000037773 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004701 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000013185 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000006834 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000007168 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000016356 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003464 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_192 | 67.04 | 59.03 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2080 | 63.16 | 58.37 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000010833 retrocopies