Parental gene:

CALM3, ENSPPYG00000010154

Aliases:None
Description:calmodulin 3 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1449]
Organism:Orangutan (Pongo abelii)
Coordinates:19:47961629..47967394(+)


>ENSPPYG00000010154
ATGAGATGCAAACCTGTGCCAGGCCTCGCCAGCGCTGACCAGCTGACTGAGGAGCAGATCGCAGAGTTCAAGGAGGCCTT
CTCCCTCTTTGACAAGGATGGAGATGGCACTATCACCACCAAGGAGTTGGGGACAGTGATGAGATCCCTGGGACAGAACC
CCACTGAAGCAGAGCTGCAGGATATGATCAATGAGGTGGATGCAGATGGGAACGGGACCATTGACTTCCCGGAGTTCCTG
ACCATGATGGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGATCCGAGAGGCGTTCCGTGTCTTTGACAAGGATGG
GAACGGCTACATCAGCGCCGCAGAGCTGCGTCACGTAATGACGAACCTGGGGGAGAAGCTGACCGATGAGGAGGTGGATG
AGATGATCAGAGAGGCTGACATCGATGGAGATGGCCAGGTCAATTATGAAGAGTTTGTACAGATGATGACTGCAAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 3192 .98 RPM
SRP007412_cerebellum 631 .35 RPM
SRP007412_heart 201 .24 RPM
SRP007412_kidney 296 .73 RPM
SRP007412_liver 104 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015712 possible_ortholog 1 retrogene
retro_acar_45,
Ailuropoda melanoleuca ENSAMEG00000008565 ortholog_one2one 3 retrogenes
retro_amel_1209, retro_amel_1562, retro_amel_421,
Bos taurus ENSBTAG00000014583 ortholog_one2one 2 retrogenes
retro_btau_113, retro_btau_135,
Canis familiaris ENSCAFG00000029151 ortholog_one2one 4 retrogenes
retro_cfam_121, retro_cfam_164, retro_cfam_225, retro_cfam_68,
Cavia porcellus ENSCPOG00000001612 ortholog_one2one 1 retrogene
retro_cpor_1316,
Erinaceus europaeus ENSEEUG00000000140 ortholog_one2one 1 retrogene
retro_eeur_468,
Echinops telfairi ENSETEG00000009377 possible_ortholog 5 retrogenes
retro_etel_1062, retro_etel_1542, retro_etel_1812, retro_etel_587, retro_etel_854,
Felis catus ENSFCAG00000004995 ortholog_one2one 1 retrogene
retro_fcat_1726,
Homo sapiens ENSG00000160014 ortholog_one2one 3 retrogenes
retro_hsap_1255, retro_hsap_1785, retro_hsap_59,
Gorilla gorilla ENSGGOG00000000212 ortholog_one2one 4 retrogenes
retro_ggor_187, retro_ggor_2234, retro_ggor_522, retro_ggor_988,
Loxodonta africana ENSLAFG00000001155 ortholog_one2one 5 retrogenes
retro_lafr_100, retro_lafr_156, retro_lafr_631, retro_lafr_646, retro_lafr_86,
Microcebus murinus ENSMICG00000013180 ortholog_one2many 3 retrogenes
retro_mmur_1032, retro_mmur_1447, retro_mmur_501,
Myotis lucifugus ENSMLUG00000010528 ortholog_one2one 1 retrogene
retro_mluc_2477,
Monodelphis domestica ENSMODG00000009222 possible_ortholog 1 retrogene
retro_mdom_1126,
Mustela putorius furo ENSMPUG00000005261 ortholog_one2one 1 retrogene
retro_mputfur_404,
Mus musculus ENSMUSG00000019370 ortholog_one2one 3 retrogenes
retro_mmus_2879, retro_mmus_3448, retro_mmus_454,
Nomascus leucogenys ENSNLEG00000002752 ortholog_one2one 2 retrogenes
retro_nleu_1407, retro_nleu_3097,
Otolemur garnettii ENSOGAG00000014764 ortholog_one2one 2 retrogenes
retro_ogar_2085, retro_ogar_3311,
Procavia capensis ENSPCAG00000005751 ortholog_one2one 1 retrogene
retro_pcap_7,
Petromyzon marinus ENSPMAG00000003323 possible_ortholog 1 retrogene
retro_pmar_12,
Pongo abelii ENSPPYG00000006060 within_species_paralog 1 retrogene
retro_pabe_1045,
Pongo abelii ENSPPYG00000012430 within_species_paralog 5 retrogenes
retro_pabe_1068, retro_pabe_1133, retro_pabe_115, retro_pabe_45, retro_pabe_599,
Pelodiscus sinensis ENSPSIG00000013173 possible_ortholog 1 retrogene
retro_psin_9,
Ictidomys tridecemlineatus ENSSTOG00000014352 ortholog_one2one 1 retrogene
retro_itri_1018,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1106 65.62 79.87
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2. retro_pabe_1466 80.13 98.11
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3. retro_pabe_3238 81.46 93.71
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4. retro_pabe_3676 86.32 59.75
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Download FASTA sequences of all ENSPPYG00000010154 retrocopies