Parental gene:

MAPK6, ENSPPYG00000006482

Aliases:None
Description:mitogen-activated protein kinase 6 [Source:HGNC Symbol;Acc:6879]
Organism:Orangutan (Pongo abelii)
Coordinates:15:48690591..48711236(+)


>ENSPPYG00000006482
ATGGCAGAGAAATTTGAAAGTCTCATGAACATTCATGGTTTTGATCTGGGTTCTAGGTATATGGACTTAAAACCATTGGG
TTGTGGAGGCAATGGCCTGGTTTTTTCTGCTGTAGACAATGACTGTGACAAAAGAGTAGCCATCAAGAAAATTGTCCTTA
CTGATCCCCAGAGTGTCAAACATGCTCTACGGGAAATCAAAATTATTAGAAGACTTGACCATGATAACATTGTGAAAGTG
TTTGAAATTCTTGGTCCCAGTGGAAGCCAATTAACAGACGATGTGGGCTCTCTTACGGAACTGAACAGTGTTTACATTGT
TCAGGAGTACATGGAGACAGACTTGGCTAATGTGCTGGAGCAGGGCCCTTTACTGGAAGAGCATGCCAGGCTTTTCATGT
ATCAGCTGCTACGGGGGCTCAAGTATATTCACTCTGCAAATGTACTGCACAGAGATCTCAAACCAGCTAATCTTTTCATT
AATACTGAAGACTTGGTGCTGAAGATAGGTGACTTTGGTCTTGCACGGATCATGGATCCTCATTATTCCCATAAGGGTCA
TCTTTCTGAAGGATTGGTTACTAAATGGTACAGATCTCCACGTCTTTTACTTTCTCCTAATAATTATACTAAAGCCATTG
ACATGTGGGCTGCAGGCTGCATCTTTGCTGAAATGCTGACTGGTAAAACCCTTTTTGCAGGTGCACATGAACTTGAACAG
ATGCAGCTGATTTTAGAATCTATTCCTGTTGTACATGAGGAAGATCGTCAGGAGCTTCTCAGCGTAATTCCAGTTTACAT
TAGAAATGACATGACTGAGCCACACAGACCTTTAACTCAGCTGCTTCCAGGAATTAGTCGAGAAGCACTGGATTTCCTGG
AACAAATTTTGACATTTAGCCCCATGGATCGGTTAACAGCAGAAGAAGCACTCTCCCATCCTTACATGAGCATATATTCT
TTTCCAATGGATGAGCCAATTTCAAGCCATCCTTTTCATATTGAAGATGAAGTTGATGATATTTTGCTTATGGATGAAAC
TCACAGTCACATTTATAACTGGGAAAGGTATCATGATTGTCAGTTTTCAGAGCATGATTGGCCTGTACATAACAACTTTG
ATATTGATGAAGTTCAGCTTGATCCAAGAGCTCTGTCCGATGTCACTGATGAAGAAGAAGTACAAGTTGATCCCCGAAAA
TATTTGGATGGAGATCGGGAAAAGTATCTGGAGGATCCTGCTTTTGATACCAATTACTCTACTGAGCCTTGTTGGCAGTA
CTCAGATCATCATGAAAACAAATATTGTGATCTGGAGTGTGGCCATACTTGTAACTACAAAACGAGGTCATCATCATATT
TAGATAACTTAGTTTGGAGAGAGAGTGAAGTTAACCATTACTATGAACCCAAGCTTATTATAGATCTTTCCAATTGGAAA
GAACAAAGCAAAGAAAAATCTGATAAGAAAGGCAAATCAAAATGTGAAAGGAATGGATTGGTTAAAGCTCAGATAGCGCT
AGAGGAAGCATCACAGCAACTGGCTGGAAAAGAAAGGGAGAAGAATCAGGGATTTGATTTTGATTCCTTTATTGCAGGAA
CTATTCAGCTTAGTTCCCAGCATGAGNNNNNNNNNNACAGCCAGTTTGTGAATGGTGGGGAGGACTGTTTTTTCATAAAT
CAGTTTTGTGAGGTAAGGAAGGATGAACAAGTTGAGAAGGAAAACACTTACACTAGTTACTTGGACAAGTTCTTTAGCAG
GAAAGAAGATACTGAAATGCTAGAAACTGAGCCAGTAGAGGATGGGAAGCTTGGGGAGAGAGGACATGAGGAAGGATTTC
TGAACAACAGTGGGGAGTTCCTCTTTAACAAGCAGCTCGAGTCCATAGGCATCCCGCAGTTTCACAGTCCAGTTGGGTCA
CCACTTAAGTCAATACAGGCCACATTAACACCTTCTGCTATGAAATCGTCCCCTCAAATTCCTCATCAAACATACAGCAG
CATTCTGAAACATCTGAACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 41 .30 RPM
SRP007412_cerebellum 82 .32 RPM
SRP007412_heart 10 .69 RPM
SRP007412_kidney 21 .28 RPM
SRP007412_liver 40 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000000962 ortholog_one2one 1 retrogene
retro_cjac_2633,
Homo sapiens ENSG00000069956 ortholog_one2one 2 retrogenes
retro_hsap_1257, retro_hsap_2519,
Gorilla gorilla ENSGGOG00000004003 ortholog_one2one 1 retrogene
retro_ggor_1571,
Monodelphis domestica ENSMODG00000001962 possible_ortholog 2 retrogenes
retro_mdom_138, retro_mdom_63,
Nomascus leucogenys ENSNLEG00000006476 ortholog_one2one 2 retrogenes
retro_nleu_1441, retro_nleu_2095,
Otolemur garnettii ENSOGAG00000030786 ortholog_one2one 1 retrogene
retro_ogar_1827,
Pongo abelii ENSPPYG00000007239 within_species_paralog 1 retrogene
retro_pabe_1440,
Pan troglodytes ENSPTRG00000020224 ortholog_one2one 3 retrogenes
retro_ptro_1464, retro_ptro_2743, retro_ptro_3045,
Sarcophilus harrisii ENSSHAG00000017091 possible_ortholog 1 retrogene
retro_shar_445,
Tupaia belangeri ENSTBEG00000007876 ortholog_one2one 2 retrogenes
retro_tbel_1879, retro_tbel_2946,
Tursiops truncatus ENSTTRG00000016253 ortholog_one2one 2 retrogenes
retro_ttru_322, retro_ttru_75,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1853 79.81 60.77
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2. retro_pabe_3322 84.98 80.53
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Download FASTA sequences of all ENSPPYG00000006482 retrocopies