Parental gene: | LDHB, ENSPPYG00000004356 |
| Aliases: | None |
| Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 12:22516341..22538995(-) |
>ENSPPYG00000004356
ATGGCAACTCTTAAGGAAAAACTCATTGCACCAGTTGCGGAAGAAGAGGCAACAGTTCCAAACAATAAGATCACTGTAGT
GGGTGTTGGACAAGTTGGTATGGCGTGTGCTATCAGCATTCTGGGAAAGTCTCTGGCTGATGAACTTGCTCTTGTGGATG
TTTTGGAAGATAAGCTTAAAGGAGAAATGATGGATCTGCAGCATGGGAGCTTATTTCTTCAGACCCCTAAAATTGTGGCA
GATAAAGATTATTCTGTGACTGCCAATTCTAAGATTGTAGTGGTAACTGCAGGAGTCCGTCAGCAAGAAGGGGAGAGTCG
GCTCAATCTGGTGCAGAGAAATGTTAATGTCTTCAAATTCATTATTCCTCAGATCGTCAAGTACAGTCCTGATTGCATCA
TAATTGTGGTTTCCAACCCAGTGGACATTCTTACGTATGTTACCTGGAAACTAAGTGGATTACCCAAACACCGCGTGATT
GGAAGTGGATGTAATCTGGATTCTGCTAGATTTCGCTACCTTATGGCTGAAAAACTTGGCATTCATCCCAGCAGCTGCCA
TGGATGGATTTTGGGGGAACATGGCGACTCAAGTGTGGCTGTGTGGAGTGGCGTGAATGTGGCAGGTGTTTCTCTCCAGG
AATTGAATCCAGAAATGGGAACTGACAATGATAGTGAAAATTGGAAGGAAGTGCATAAGATGGTGGTTGAAAGTGCTTAT
GAAGTCATCAAGCTAAAAGGATATACCAACTGGGCTATTGGATTAAGTGTGGCTGATCTTATTGAATCCATGTTGAAAAA
TCTATCCAGGATTCATCCCGTGTCAACAATGGTAAAGGGGATGTATGGCATTGAGAATGAAGTCTTCCTGAGCCTTCCGT
GTATCCTCAATGCCCGGGGATTAACCAGCGTTATCAACCAGAAGCTAAAGGATGATGAGGTTGCTCAGCTCAAGAAAAGT
GCAGATACCCTGTGGGACATCCAGAAGGACCTAAAAGACCTGTGA
ATGGCAACTCTTAAGGAAAAACTCATTGCACCAGTTGCGGAAGAAGAGGCAACAGTTCCAAACAATAAGATCACTGTAGT
GGGTGTTGGACAAGTTGGTATGGCGTGTGCTATCAGCATTCTGGGAAAGTCTCTGGCTGATGAACTTGCTCTTGTGGATG
TTTTGGAAGATAAGCTTAAAGGAGAAATGATGGATCTGCAGCATGGGAGCTTATTTCTTCAGACCCCTAAAATTGTGGCA
GATAAAGATTATTCTGTGACTGCCAATTCTAAGATTGTAGTGGTAACTGCAGGAGTCCGTCAGCAAGAAGGGGAGAGTCG
GCTCAATCTGGTGCAGAGAAATGTTAATGTCTTCAAATTCATTATTCCTCAGATCGTCAAGTACAGTCCTGATTGCATCA
TAATTGTGGTTTCCAACCCAGTGGACATTCTTACGTATGTTACCTGGAAACTAAGTGGATTACCCAAACACCGCGTGATT
GGAAGTGGATGTAATCTGGATTCTGCTAGATTTCGCTACCTTATGGCTGAAAAACTTGGCATTCATCCCAGCAGCTGCCA
TGGATGGATTTTGGGGGAACATGGCGACTCAAGTGTGGCTGTGTGGAGTGGCGTGAATGTGGCAGGTGTTTCTCTCCAGG
AATTGAATCCAGAAATGGGAACTGACAATGATAGTGAAAATTGGAAGGAAGTGCATAAGATGGTGGTTGAAAGTGCTTAT
GAAGTCATCAAGCTAAAAGGATATACCAACTGGGCTATTGGATTAAGTGTGGCTGATCTTATTGAATCCATGTTGAAAAA
TCTATCCAGGATTCATCCCGTGTCAACAATGGTAAAGGGGATGTATGGCATTGAGAATGAAGTCTTCCTGAGCCTTCCGT
GTATCCTCAATGCCCGGGGATTAACCAGCGTTATCAACCAGAAGCTAAAGGATGATGAGGTTGCTCAGCTCAAGAAAAGT
GCAGATACCCTGTGGGACATCCAGAAGGACCTAAAAGACCTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 504 .36 RPM |
| SRP007412_cerebellum | 372 .22 RPM |
| SRP007412_heart | 1192 .91 RPM |
| SRP007412_kidney | 860 .49 RPM |
| SRP007412_liver | 33 .91 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016175 | possible_ortholog | 4 retrogenes | |
| Canis familiaris | ENSCAFG00000012195 | possible_ortholog | 9 retrogenes | |
| Echinops telfairi | ENSETEG00000019955 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000012639 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000004825 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012155 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002679 | possible_ortholog | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000017786 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000000172 | possible_ortholog | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000003435 | within_species_paralog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000003437 | within_species_paralog | 5 retrogenes | |
| Sus scrofa | ENSSSCG00000000576 | possible_ortholog | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000013759 | ortholog_one2one | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1738 | 79.26 | 96.11 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1744 | 76.14 | 78.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3780 | 85.87 | 83.83 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000004356 retrocopies