Parental gene:

ENSPPYG00000001152

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:1:135962765..135972855(-)


>ENSPPYG00000001152
ATGGGGTTTGTTAAAGTTGTTAAGAATAAGGCCTACTTTAAGAGATACCAAGTGAAATTTAGAAGACGACGAGAGGGTAA
AACTGATTATTATGCTCGGAAACGCTTGGTGATACAAGATAAAAATAAATACAACACACCCAAATACAGGATGATAGTTC
GTGTAACAAACAGAGATATCATTTGTCAGATTGCTTATGCCCGTATAGAGGGGGATATGATAGTCTGCGCAGCATATGCA
CACGAACTGCCAAAATATGGTGTGAAGGTTGGCCTGACAAATTATGCTGCAGCATATTGTACTGGCCTGCTGCTGGCCCG
CAGGCTTCTCAATAGGTTTGGCATGGACAAGATCTATGAAGGCCAAGTGGAGGTGACTGGTGATGAATACAATGTGGAAA
GCATTGATGGTCAGCCAGGTGCCTTCACCTGCTATTTGGATGCAGGCCTTGCCAGGACTACCACTGGCAATAAAGTTTTT
GGTGCCCTGAAGGGAGCTGTGGATGGAGGCTTGTCTATCCCTCACAGTACCAAACGATTCCCTGGTTATGATTCTGAAAG
CAAGGAATTTAATGCAGAAGTACACCGGAAGCACATCATGGGCCAGAATGTTGCAGATTACATGCGCTACTTAATGGAAG
AAGATGAAGATGCTTACAAGAAACAGTTCTCTCAATACATAAAGAACAGCGTAACTCCAGACATGATGGAGGAGATGTAT
AAGAAAGCTCATGCTGCTATACGAGAGAATCCAGTCTATGAAAAGAAGCCCAAGAAAGAAGTTAAAAAGAAGAGGTGGAA
CCGTCCCAAAATGTCCCTTGCTCAGAAGAAGGATCGGGTAGCTCAAAAGAAGGCAAGCTTCCTCAGAGCTCAGGAGCGGG
CTGCTGAGAGCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 43 .02 RPM
SRP007412_cerebellum 43 .29 RPM
SRP007412_heart 58 .73 RPM
SRP007412_kidney 101 .00 RPM
SRP007412_liver 85 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000020150 possible_ortholog 4 retrogenes
retro_cfam_1505, retro_cfam_1696, retro_cfam_905, retro_cfam_906,
Erinaceus europaeus ENSEEUG00000002852 ortholog_one2many 1 retrogene
retro_eeur_620,
Echinops telfairi ENSETEG00000009889 ortholog_one2many 8 retrogenes
retro_etel_1044, retro_etel_1089, retro_etel_1103, retro_etel_1264, retro_etel_2028, retro_etel_64, retro_etel_785, retro_etel_814,
Felis catus ENSFCAG00000024680 possible_ortholog 5 retrogenes
retro_fcat_281, retro_fcat_304, retro_fcat_453, retro_fcat_458, retro_fcat_463,
Homo sapiens ENSG00000122406 ortholog_one2many 30 retrogenes
retro_hsap_1266, retro_hsap_138, retro_hsap_1469, retro_hsap_1539, retro_hsap_1588, retro_hsap_1767, retro_hsap_183, retro_hsap_1989, retro_hsap_2143, retro_hsap_2385, retro_hsap_2594, retro_hsap_2600, retro_hsap_2777, retro_hsap_2962, retro_hsap_3105, retro_hsap_3178, retro_hsap_3181, retro_hsap_3209, retro_hsap_3430, retro_hsap_3520, retro_hsap_3941, retro_hsap_4048, retro_hsap_4104, retro_hsap_486, retro_hsap_590, retro_hsap_632, retro_hsap_646, retro_hsap_742, retro_hsap_780, retro_hsap_827,
Gorilla gorilla ENSGGOG00000002699 ortholog_one2many 24 retrogenes
retro_ggor_1129, retro_ggor_1172, retro_ggor_1206, retro_ggor_1342, retro_ggor_1343, retro_ggor_1656, retro_ggor_1934, retro_ggor_2052, retro_ggor_2130, retro_ggor_2178, retro_ggor_2243, retro_ggor_2318, retro_ggor_233, retro_ggor_2380, retro_ggor_264, retro_ggor_2649, retro_ggor_2715, retro_ggor_2755, retro_ggor_457, retro_ggor_521, retro_ggor_553, retro_ggor_622, retro_ggor_647, retro_ggor_996,
Loxodonta africana ENSLAFG00000011916 possible_ortholog 6 retrogenes
retro_lafr_1025, retro_lafr_1098, retro_lafr_302, retro_lafr_988, retro_lafr_989, retro_lafr_992,
Macropus eugenii ENSMEUG00000006361 ortholog_one2many 3 retrogenes
retro_meug_1168, retro_meug_1537, retro_meug_2146,
Myotis lucifugus ENSMLUG00000008956 possible_ortholog 1 retrogene
retro_mluc_925,
Monodelphis domestica ENSMODG00000011635 ortholog_one2many 1 retrogene
retro_mdom_748,
Nomascus leucogenys ENSNLEG00000010500 ortholog_many2many 2 retrogenes
retro_nleu_2102, retro_nleu_39,
Ornithorhynchus anatinus ENSOANG00000004669 ortholog_many2many 1 retrogene
retro_oana_97,
Otolemur garnettii ENSOGAG00000013246 ortholog_one2many 6 retrogenes
retro_ogar_1164, retro_ogar_134, retro_ogar_1627, retro_ogar_2374, retro_ogar_2633, retro_ogar_707,
Procavia capensis ENSPCAG00000011865 possible_ortholog 2 retrogenes
retro_pcap_159, retro_pcap_201,
Petromyzon marinus ENSPMAG00000002040 ortholog_one2many 1 retrogene
retro_pmar_23,
Pan troglodytes ENSPTRG00000000963 ortholog_one2many 30 retrogenes
retro_ptro_1038, retro_ptro_1068, retro_ptro_1184, retro_ptro_1326, retro_ptro_139, retro_ptro_1519, retro_ptro_1524, retro_ptro_1568, retro_ptro_169, retro_ptro_1744, retro_ptro_1878, retro_ptro_2005, retro_ptro_2241, retro_ptro_2262, retro_ptro_2264, retro_ptro_2329, retro_ptro_2391, retro_ptro_2674, retro_ptro_2742, retro_ptro_2785, retro_ptro_2941, retro_ptro_3027, retro_ptro_366, retro_ptro_433, retro_ptro_460, retro_ptro_470, retro_ptro_528, retro_ptro_577, retro_ptro_866, retro_ptro_997,
Sarcophilus harrisii ENSSHAG00000006417 ortholog_one2many 1 retrogene
retro_shar_202,
Tarsius syrichta ENSTSYG00000014038 possible_ortholog 8 retrogenes
retro_tsyr_1462, retro_tsyr_1548, retro_tsyr_206, retro_tsyr_248, retro_tsyr_670, retro_tsyr_737, retro_tsyr_786, retro_tsyr_952,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_51 94.28 100.00
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2. retro_pabe_246 88.19 85.19
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3. retro_pabe_247 88.98 85.19
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4. retro_pabe_446 86.42 89.23
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5. retro_pabe_447 87.97 81.14
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6. retro_pabe_480 89.19 99.66
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7. retro_pabe_562 72.90 71.38
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8. retro_pabe_572 88.93 87.54
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9. retro_pabe_637 87.08 79.46
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10. retro_pabe_740 87.25 100.00
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11. retro_pabe_1053 80.29 69.70
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12. retro_pabe_1219 81.54 65.66
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13. retro_pabe_1274 87.03 80.47
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14. retro_pabe_1307 88.19 85.19
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15. retro_pabe_1331 98.54 91.92
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16. retro_pabe_1501 79.05 84.18
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17. retro_pabe_1918 84.66 63.30
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18. retro_pabe_1931 87.88 100.00
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19. retro_pabe_2019 84.62 74.41
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20. retro_pabe_2123 72.92 63.97
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21. retro_pabe_2238 77.00 99.66
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22. retro_pabe_2457 86.20 99.33
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23. retro_pabe_2640 79.27 55.22
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24. retro_pabe_2641 79.83 79.80
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25. retro_pabe_2658 84.56 100.00
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26. retro_pabe_2813 83.91 87.21
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27. retro_pabe_2841 70.56 77.10
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28. retro_pabe_2909 86.20 100.00
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29. retro_pabe_3247 85.23 100.00
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30. retro_pabe_3320 86.83 81.82
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31. retro_pabe_3360 83.17 67.68
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32. retro_pabe_3534 96.92 85.52
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Download FASTA sequences of all ENSPPYG00000001152 retrocopies