Parental gene: | HNRNPA1L2, ENSPCAG00000001867 |
| Aliases: | None |
| Description: | heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067] |
| Organism: | Hyrax (Procavia capensis) |
| Coordinates: | scaffold_15862:28822..32225(-) |
>ENSPCAG00000001867
ATGTCTAAGTCAGAGTCTCCTAAAGAGCCCGAACAGCTGCGGAAACTCTTCATCGGAGGTTTGAGCTTTGAAACAACGGA
TGAGAGTCTGAGGAGCCATTTTGAGCAATGGGGGACGCTCACGGACTGCGTGGTAATGAGAGATCCAAACACCAAGCGCT
CCAGAGGCTTTGGGTTCGTCACTTACTCCACTGTGGAAGAGGTGGATGCAGCCATGAACGCACGGCCGCACAAGGTGGAT
GGAAGAGTTGTGGAACCAAAGAGGGCTGTTTCTCGAGAGGACTCTCAAAGACCAGGTGCTCACTTAGTGAAAAAGTTTGT
TGGTGGTGAAGACACAGAACATCACAGAGATTATTTTGAGCAGTATGGGAAAATTGAAGTGGAAATCATGACTGATCGAG
GCAGTGGCAAGAAGAGGTTTGCTTTCGTTACTTTTGATGACCACGACTCAGTAGATAAAATTGTCATTCAGAAATACCAT
ACTGTGAATGGGCACAACTGTGAAGTAAGAAAAGCCCTGTCAAAGCAAGAGATGGCCAGTGCCTCCTCCAGCCAGAGAGG
TCGGAGTGGTTCTGGAAACTTCGGTGGTGGCCGTGGAGGTGGTTTTGTTGGGAATGACAACTTCGGTCGTGGAGGAAACT
TCAGTGGACGAGGTGGCTTTGGTGGCAGCCGTGGTGGCGGTGGATATGGAGGCAGTGGAGATGGTTATAATGGATTTGGT
AATGACGGTGGTTATGGAGGAGGCGGTCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGGGTTATGG
AAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATAACAACGGAGGAGGCGGAGGCGGCTTTGGCGGTGGTAGTGGTA
GCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAATCAGTCTTCAAATTTTGGACCCATGAAGGGA
GGAAACTTTGGAGGCAGAAGTTCTGGCCCTTATGGTGGTGGAGGTCAATACTTTGCCAAACCACGAAACCAAGGTGGCTA
TGGTGGTTCAAGCAGCAGCAGTAGCTATGGCAGTGGCTTTTAA
ATGTCTAAGTCAGAGTCTCCTAAAGAGCCCGAACAGCTGCGGAAACTCTTCATCGGAGGTTTGAGCTTTGAAACAACGGA
TGAGAGTCTGAGGAGCCATTTTGAGCAATGGGGGACGCTCACGGACTGCGTGGTAATGAGAGATCCAAACACCAAGCGCT
CCAGAGGCTTTGGGTTCGTCACTTACTCCACTGTGGAAGAGGTGGATGCAGCCATGAACGCACGGCCGCACAAGGTGGAT
GGAAGAGTTGTGGAACCAAAGAGGGCTGTTTCTCGAGAGGACTCTCAAAGACCAGGTGCTCACTTAGTGAAAAAGTTTGT
TGGTGGTGAAGACACAGAACATCACAGAGATTATTTTGAGCAGTATGGGAAAATTGAAGTGGAAATCATGACTGATCGAG
GCAGTGGCAAGAAGAGGTTTGCTTTCGTTACTTTTGATGACCACGACTCAGTAGATAAAATTGTCATTCAGAAATACCAT
ACTGTGAATGGGCACAACTGTGAAGTAAGAAAAGCCCTGTCAAAGCAAGAGATGGCCAGTGCCTCCTCCAGCCAGAGAGG
TCGGAGTGGTTCTGGAAACTTCGGTGGTGGCCGTGGAGGTGGTTTTGTTGGGAATGACAACTTCGGTCGTGGAGGAAACT
TCAGTGGACGAGGTGGCTTTGGTGGCAGCCGTGGTGGCGGTGGATATGGAGGCAGTGGAGATGGTTATAATGGATTTGGT
AATGACGGTGGTTATGGAGGAGGCGGTCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGGGTTATGG
AAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATAACAACGGAGGAGGCGGAGGCGGCTTTGGCGGTGGTAGTGGTA
GCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAATCAGTCTTCAAATTTTGGACCCATGAAGGGA
GGAAACTTTGGAGGCAGAAGTTCTGGCCCTTATGGTGGTGGAGGTCAATACTTTGCCAAACCACGAAACCAAGGTGGCTA
TGGTGGTTCAAGCAGCAGCAGTAGCTATGGCAGTGGCTTTTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000009228 | ortholog_one2one | 7 retrogenes | |
| Loxodonta africana | ENSLAFG00000029587 | possible_ortholog | 5 retrogenes | |
| Mustela putorius furo | ENSMPUG00000004620 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000005735 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000013350 | possible_ortholog | 1 retrogene | |
| Oreochromis niloticus | ENSONIG00000012248 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000011543 | other_paralog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000025850 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pcap_111 | 82.30 | 64.72 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pcap_162 | 87.83 | 71.11 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pcap_377 | 82.78 | 55.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pcap_424 | 89.58 | 82.50 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pcap_435 | 91.32 | 64.72 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPCAG00000001867 retrocopies