Parental gene:

BLOC1S6, ENSOCUG00000017351

Aliases:None
Description:biogenesis of lysosomal organelles complex-1, subunit 6, pallidin [Source:HGNC Symbol;Acc:8549]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:17:27001869..27020283(-)


>ENSOCUG00000017351
ATGGACACGAGTGTCCCCGGGTCTCCGTCCCCGGACGGGGTCCCGACAGAGCCACCGGACAGCCTGGAGGTCCGGGAACC
GATGCCTGGTGTAAGTGACACTTCTCCAGATGAAGGGTTAATAGAGGACCTGAGTGTAGAAGACAAAGCTGTGGAGCAGC
TGGCAGAAGGATTGCTTTCTCACTACTTGCCAGACCTGCAGAGATCAAAACAAGCCCTCCAGGAGCTCACACAGAACCAG
GTTGTATTATTAGACACACTGGAACAAGAGATTTCAAAATTTAAAGAATGTCATTCTATGTTGGACATTAATGCTTTGTT
CACTGAAGCTAAACACTATCATGCCAAGTTGGTGAATATAAGAAAAGAGATGCTGATGCTTCATGAAAAGACATCAAAGT
TAAAAAAAAGAGCACTGAAACTGCAGCAGAAGAGGCAAAAAGAAGAGTTGGAAAGGGAGCAGCAGCGGGAGAAGGAATTT
GAGAGAGAGAAGCAGTTAACTGCCAGACCAGCCAAGAGGACGTGA

Library Parental gene expression (RPM)
SRP017611_liver 2 .24 RPM
SRP017611_kidney 11 .35 RPM
SRP017611_brain 8 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012059 ortholog_one2one 7 retrogenes
retro_chof_1342, retro_chof_20, retro_chof_2054, retro_chof_2102, retro_chof_211, retro_chof_248, retro_chof_600,
Dasypus novemcinctus ENSDNOG00000019785 ortholog_one2one 5 retrogenes
retro_dnov_1687, retro_dnov_1885, retro_dnov_2009, retro_dnov_2411, retro_dnov_275,
Echinops telfairi ENSETEG00000007378 ortholog_one2one 1 retrogene
retro_etel_404,
Gorilla gorilla ENSGGOG00000013892 ortholog_one2one 1 retrogene
retro_ggor_2983,
Macropus eugenii ENSMEUG00000012636 ortholog_one2one 1 retrogene
retro_meug_778,
Microcebus murinus ENSMICG00000005595 ortholog_one2one 1 retrogene
retro_mmur_1610,
Monodelphis domestica ENSMODG00000017628 ortholog_one2one 2 retrogenes
retro_mdom_1673, retro_mdom_561,
Otolemur garnettii ENSOGAG00000013706 ortholog_one2many 1 retrogene
retro_ogar_206,
Pan troglodytes ENSPTRG00000007038 ortholog_one2one 1 retrogene
retro_ptro_2949,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1575 81.25 54.60
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Download FASTA sequences of all ENSOCUG00000017351 retrocopies