Parental gene:

ENSOCUG00000017342

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:4:39662882..39671794(+)


>ENSOCUG00000017342
ATGTCGGGCGAGGACGAGCAGCAGGAGCAAACTATCGCCGAGGACCTGGTCGTGACCAAGTATAAGATGGGGGGCGACAT
CGCCAACCGGGTACTTCGGTCTTTGGTGGAAGCATCCAGCTCAGGTGTGTCCGTGCTGAGCCTGTGTGAGAAGGGTGATG
CCATGATCATGGAAGAGACAGGGAAGATCTTTAAGGCTAACGATTCTGTCTTTACAGGTATTGCCTTTCCTACCAGCATT
TCAGTAAATAACTGTGTGTGTCACTTCTCGCCTTTGAAGAGTGACCAGGACTATATTCTCAAGGAAGGTGACTTGGTAAA
AATTGACCTTGGGGTCCATGTGGATGGCTTTATCGCGAATGTGGCTCACACTTTCGTGGTCGGTGTAGCTCAGGGGACCC
AAGTGACAGGGCGGAAAGCAGATGTCATTAAGGCAGCTCACCTTTGTGCTGAGGCTGCCCTGCGCCTGGTCAAACCTGGA
AATCAGAACACACAGGTGACAGAAGCTTGGAACAAGGTTGCCCACTCATTTAACTGCACACCAATTGAAGGTATGCTGTC
CCACCAACTGAAGCAGCATGTCATCGATGGAGAGAAAACCATTATCCAGAATCCCACAGACCAGCAGAAGAAGGACCATG
AAAAAGCTGAATTCGAGGTGCACGAAGTATATGCTGTGGATGTCCTCGTCAGCTCAGGAGAGGGCAAGGCCAAGGATGCA
GGACAGAGAACCACCATTTACAAACGAGACCCATCTAAACAATACGGCCTGAAAATGAAAACCTCACGTGCCTTCTTCAG
TGAGGTGGAGAGGCGTTTTGATGCCATGCCATTTACCTTAAGAGCATTTGAAGATGAGAAGAAGGCTCGGATGGGTGTGG
TGGAATGTGCCAAACACGAACTGCTGCAGCCGTTTAATGTTCTCTATGAGAAGGAGGGTGAATTTGTTGCCCAGTTTAAA
TTTACAGTTCTGCTCATGCCCAACGGCCCCATGAGGATAACCAGTGGTCCCTTTGAGCCCGACCTCTACAAGTCGGAGCT
GGAGGTCCAGGACGCAGAGCTGAAGGCCCTCCTCCAGAGTTCCGCAAGTCGGAAAACCCAGAAAAAGAAGAAAAAGAAGG
CCTCCAAGACTGCAGAGAATGCCACCAGTGGGGAGACGTTAGAAGAAAATGAGGCTGGGGACTGA

Library Parental gene expression (RPM)
SRP017611_liver 23 .89 RPM
SRP017611_kidney 60 .31 RPM
SRP017611_brain 48 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007181 ortholog_one2one 2 retrogenes
retro_chof_1089, retro_chof_1847,
Homo sapiens ENSG00000170515 possible_ortholog 6 retrogenes
retro_hsap_1930, retro_hsap_2413, retro_hsap_2868, retro_hsap_3646, retro_hsap_4191, retro_hsap_4895,
Macaca mulatta ENSMMUG00000002164 ortholog_one2one 2 retrogenes
retro_mmul_1168, retro_mmul_2631,
Mus musculus ENSMUSG00000025364 ortholog_one2one 1 retrogene
retro_mmus_2803,
Sus scrofa ENSSSCG00000000377 ortholog_one2one 1 retrogene
retro_sscr_338,
Sus scrofa ENSSSCG00000022666 possible_ortholog 2 retrogenes
retro_sscr_1143, retro_sscr_337,
Tarsius syrichta ENSTSYG00000006777 ortholog_one2one 1 retrogene
retro_tsyr_746,
Vicugna pacos ENSVPAG00000009523 possible_ortholog 1 retrogene
retro_vpac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1733 84.23 70.05
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Download FASTA sequences of all ENSOCUG00000017342 retrocopies