Parental gene: | TSR1, ENSOCUG00000014256 |
| Aliases: | None |
| Description: | TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25542] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 19:15829271..15842481(+) |
>ENSOCUG00000014256
ATGGCGGCTCACCGCTCGGGCCCTCTCAAGCAGCAGAATAAAGCCCATAAAGGCGGGCGGCATCGTGGCCGGGGGTCCGC
ACAGCGGGACAACAAGGGCCGTCTAGCACTGAAAGTCATATGTAAGAAGGCGAGGAAAGAGCTCAGCAGAGTCGACCAGA
GGCATCGCGCCAGCCAGCTCCGAAAGCAGAAGAAGGAGGCGGTTCTGGCAGAGAAGAGACACCTAGGCAGCAAAGATGGC
CCTCCTCATCAAGTCTTGGTGGTGCCTCTGCACAATAGGGTTTCCTTGTCAGAGGCCTTTCGTCTGCTTCAGGACACGGA
CACTGGAACAGTCCACTTGAATGTATGGGGCAGCACCCAAAGTTTTATGCTGCTATGTCCACGGTTGAAACACCGGTGGT
TTTTCACATCTGCAAGGCCAGCTCCAGGGGATCTGCATACTGTGTTAGATATGGCCAAAGTAGCGGACACCATCGTGTTC
CTCCTTGATCCTCTAGAAGGCTGGGACAACACTGGGGATTACTGTCTTTCCTGCCTCTTTGCTCAGGGCCTCCCCACTTA
CACACTAGCTGTCCAGGGGGTTTCTGGCCTTCCACCGAAGAAACAAATAGATGCCAGAAAGAAGCTAAGTAAAGCAGTGG
AGAAGCGCTTTCCTGATGACAAACTCCTCCTGTTAGACACTCAGCAGGAGGCAGGGATGCTGCTGAGGCAGTTGGCTAAC
CAGAAGCAGCGGCATCTTGCATTTCGAGATCGGCGGGCCTACCTGTTTGCCCACACTGCTGATTTTGTGGCTAGTGAAGA
GAATAACTTGGTGGGCACCCTGAAACTCTCAGGCTATGTTCGTGGGCAGGCTCTGAATGTAAATAGCTTGCTACATATTG
TTGGACATGGTGATTTCCAGATGAAACAGATAGACGCCCCCACGGACCCTTTTCCTTTAAATACTAGAGTGATTAAACCC
CAAAAGGACCCAGGCATGGTGATGGAGATTTGTGCTATGGATGCTGTAACTGATATGGAAGAAGACATTAAAGTCCTAAT
GAAGGCAGACCCTGAGAAACAGGAATCTTTGCAAACAGAGGTTATCCCAGATCCAATGGAAGGGGAGCAGACTTGGCCTA
CTGAGGAGGAGCTAAGGGAAGCAAATGCTATACTTCTTGAAGGAACTTCCAAAGTGGTAAAGAAGGTCCCCAAAGGAACA
TCCAGTTACCAAGCTGAGTGGATTTTGGATGAAGATGGTGACAGTGGTGGGGAAGGAGATGAATATGATGATACAGAACA
TGAGGATTTTATGGAAGAGGAATCTCAGGATGAGAGTAGTGAAGTGGAAGAAGAGGAGGAATGTGAAACTATGACTGTAG
GGGACTCTGTACGTGATGATCTATATGACGAGAATGTAGATGAAGAGGCTGAGGAAAAAATGTTGGAGAAATATAAACAA
GAAAGACTGGAAGAGATGTTTCCAGATGAAGTGGACACCCCCCGTGATGTGGCTGCCAGAATTCGATTTCAGAAATACAG
AGGCCTTAAGAGTTTCCGGACATCTCCATGGGATCCTAAGGAAAACCTTCCTCGAGATTATGCTCGGATCTTTCAGTTTC
AGAACTTTGCTAATACCAGGAAAAGCATCTTTAAAGAGATTGATGACAAAGAGGTTGAAGGAGCTGAGGTTGGCTGGTAT
GTCACACTTCACGTCTCGGATGTTCCTGTCTCAGTAGTGGAGTCCTTCAGGCGAGGAGCACCTATGATTGCATTTTCTTT
ACTCCCTCATGAACAGAAGATGTCAGTATTGAATATGGTGGTGAGGCGGAACCCTGGTGACACAGAGCCTGTGAAAGCCA
AAGAGGAGCTGATCTTCCACTGTGGGTTCCGGCGCTTCCGAGCTTCACCATTATTCTCTCAGCACACTGCAGCGGATAAA
CATAAATTTCAGAGATTCCTGACTGCTGATGTGGCCCTAGTGGTAACAGTATATGCGCCAATCACTTTTCCTCCTGCATC
TGTGCTGCTTTTCAAACAGAAAAGCAATGGAATGCACAACCTCATTGCTACAGGCCATCTGTTGTCAGTGGATCCAGACA
GAATGGTCATCAAGAGAGTTGTTCTGAGTGGTCATCCTTTCAAAATTTTTACTAAGACAGCAGTAGTACGTTACATGTTC
TTCAACAGAGAGGATGTGCTATGGTTTAAACCAGTGGAACTGAGAACAAAGTGGGGCCGAAGGGGACACATCAAAGAGCC
TTTAGGCACCCATGGCCACATGAAATGCAGTTTTGATGGGAAGCTAAAATCTCAAGACACAGTACTAATGAACCTCTATA
AACGAGTTTTCCCCAAATGGACTTATGATCCGTATGTACCAGAACCAGTACCTTGGATAAAAAGTGAGATTCCTTCAACA
GTGCTTGAAATGGACCCAGAATAA
ATGGCGGCTCACCGCTCGGGCCCTCTCAAGCAGCAGAATAAAGCCCATAAAGGCGGGCGGCATCGTGGCCGGGGGTCCGC
ACAGCGGGACAACAAGGGCCGTCTAGCACTGAAAGTCATATGTAAGAAGGCGAGGAAAGAGCTCAGCAGAGTCGACCAGA
GGCATCGCGCCAGCCAGCTCCGAAAGCAGAAGAAGGAGGCGGTTCTGGCAGAGAAGAGACACCTAGGCAGCAAAGATGGC
CCTCCTCATCAAGTCTTGGTGGTGCCTCTGCACAATAGGGTTTCCTTGTCAGAGGCCTTTCGTCTGCTTCAGGACACGGA
CACTGGAACAGTCCACTTGAATGTATGGGGCAGCACCCAAAGTTTTATGCTGCTATGTCCACGGTTGAAACACCGGTGGT
TTTTCACATCTGCAAGGCCAGCTCCAGGGGATCTGCATACTGTGTTAGATATGGCCAAAGTAGCGGACACCATCGTGTTC
CTCCTTGATCCTCTAGAAGGCTGGGACAACACTGGGGATTACTGTCTTTCCTGCCTCTTTGCTCAGGGCCTCCCCACTTA
CACACTAGCTGTCCAGGGGGTTTCTGGCCTTCCACCGAAGAAACAAATAGATGCCAGAAAGAAGCTAAGTAAAGCAGTGG
AGAAGCGCTTTCCTGATGACAAACTCCTCCTGTTAGACACTCAGCAGGAGGCAGGGATGCTGCTGAGGCAGTTGGCTAAC
CAGAAGCAGCGGCATCTTGCATTTCGAGATCGGCGGGCCTACCTGTTTGCCCACACTGCTGATTTTGTGGCTAGTGAAGA
GAATAACTTGGTGGGCACCCTGAAACTCTCAGGCTATGTTCGTGGGCAGGCTCTGAATGTAAATAGCTTGCTACATATTG
TTGGACATGGTGATTTCCAGATGAAACAGATAGACGCCCCCACGGACCCTTTTCCTTTAAATACTAGAGTGATTAAACCC
CAAAAGGACCCAGGCATGGTGATGGAGATTTGTGCTATGGATGCTGTAACTGATATGGAAGAAGACATTAAAGTCCTAAT
GAAGGCAGACCCTGAGAAACAGGAATCTTTGCAAACAGAGGTTATCCCAGATCCAATGGAAGGGGAGCAGACTTGGCCTA
CTGAGGAGGAGCTAAGGGAAGCAAATGCTATACTTCTTGAAGGAACTTCCAAAGTGGTAAAGAAGGTCCCCAAAGGAACA
TCCAGTTACCAAGCTGAGTGGATTTTGGATGAAGATGGTGACAGTGGTGGGGAAGGAGATGAATATGATGATACAGAACA
TGAGGATTTTATGGAAGAGGAATCTCAGGATGAGAGTAGTGAAGTGGAAGAAGAGGAGGAATGTGAAACTATGACTGTAG
GGGACTCTGTACGTGATGATCTATATGACGAGAATGTAGATGAAGAGGCTGAGGAAAAAATGTTGGAGAAATATAAACAA
GAAAGACTGGAAGAGATGTTTCCAGATGAAGTGGACACCCCCCGTGATGTGGCTGCCAGAATTCGATTTCAGAAATACAG
AGGCCTTAAGAGTTTCCGGACATCTCCATGGGATCCTAAGGAAAACCTTCCTCGAGATTATGCTCGGATCTTTCAGTTTC
AGAACTTTGCTAATACCAGGAAAAGCATCTTTAAAGAGATTGATGACAAAGAGGTTGAAGGAGCTGAGGTTGGCTGGTAT
GTCACACTTCACGTCTCGGATGTTCCTGTCTCAGTAGTGGAGTCCTTCAGGCGAGGAGCACCTATGATTGCATTTTCTTT
ACTCCCTCATGAACAGAAGATGTCAGTATTGAATATGGTGGTGAGGCGGAACCCTGGTGACACAGAGCCTGTGAAAGCCA
AAGAGGAGCTGATCTTCCACTGTGGGTTCCGGCGCTTCCGAGCTTCACCATTATTCTCTCAGCACACTGCAGCGGATAAA
CATAAATTTCAGAGATTCCTGACTGCTGATGTGGCCCTAGTGGTAACAGTATATGCGCCAATCACTTTTCCTCCTGCATC
TGTGCTGCTTTTCAAACAGAAAAGCAATGGAATGCACAACCTCATTGCTACAGGCCATCTGTTGTCAGTGGATCCAGACA
GAATGGTCATCAAGAGAGTTGTTCTGAGTGGTCATCCTTTCAAAATTTTTACTAAGACAGCAGTAGTACGTTACATGTTC
TTCAACAGAGAGGATGTGCTATGGTTTAAACCAGTGGAACTGAGAACAAAGTGGGGCCGAAGGGGACACATCAAAGAGCC
TTTAGGCACCCATGGCCACATGAAATGCAGTTTTGATGGGAAGCTAAAATCTCAAGACACAGTACTAATGAACCTCTATA
AACGAGTTTTCCCCAAATGGACTTATGATCCGTATGTACCAGAACCAGTACCTTGGATAAAAAGTGAGATTCCTTCAACA
GTGCTTGAAATGGACCCAGAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 25 .28 RPM |
| SRP017611_kidney | 47 .03 RPM |
| SRP017611_brain | 39 .74 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000019273 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000014833 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_848 | 72.99 | 50.43 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000014256 retrocopies