Parental gene: | CSNK1A1, ENSOCUG00000006669 |
| Aliases: | CSNK1A1, CKIALPHA |
| Description: | casein kinase 1, alpha 1 (CSNK1A1), mRNA [Source:RefSeq mRNA;Acc:NM_001082373] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 3:31303943..31350583(-) |
>ENSOCUG00000006669
ATGGCGAGCAGCAGCGGCTCCAAGGCCGAATTCATTGTCGGAGGGAAATACAAACTGGTACGGAAGATCGGGTCTGGCTC
CTTCGGGGACATTTATCTGGCCATCAACATCACCAACGGCGAGGAAGTGGCAGTGAAGCTAGAGTCGCAGAAGGCCAGGC
ATCCCCAGTTGCTGTACGAGAGCAAACTCTATAAGATTCTTCAAGGTGGGGTTGGCATCCCCCACATACGGTGGTATGGA
CAGGAAAAAGACTATAATGTACTAGTCATGGATCTTCTGGGACCCAGCCTCGAAGACCTCTTCAATTTCTGTTCAAGAAG
GTTCACAATGAAAACTGTACTTATGTTGGCTGACCAGATGATCAGTAGAATTGAATATGTGCATACGAAGAATTTTATAC
ACAGAGACATTAAGCCAGATAACTTCCTAATGGGTATTGGTCGTCACTGTAATAAGTTATTCCTTATTGATTTTGGTTTG
GCCAAAAAGTACAGAGACAACAGAACAAGGCAACACATACCATATAGAGAAGATAAAAACCTCACTGGCACTGCCCGATA
TGCTAGCATCAATGCACATCTTGGTATTGAACAGAGCCGCCGAGATGACATGGAGTCATTAGGATATGTTTTGATGTATT
TTAATAGAACCAGCCTGCCGTGGCAAGGACTAAAGGCTGCAACAAAGAAACAAAAATACGAGAAGATTAGCGAAAAGAAG
ATGTCCACTCCTGTTGAAGTTTTATGTAAGGGGTTTCCTGCGGAGTTTGCCATGTACTTAAACTATTGTCGTGGGCTGCG
CTTTGAGGAAGCCCCGGATTACATGTATCTGAGGCAGCTATTCCGCATCCTTTTCAGGACCCTGAACCACCAATATGACT
ACACATTTGATTGGACAATGTTAAAGCAGAAAGCAGCACAGCAGGCAGCATCTTCCAGTGGGCAGGGTCAGCAGGCCCAA
ACCCCCACAGGTTTCTAA
ATGGCGAGCAGCAGCGGCTCCAAGGCCGAATTCATTGTCGGAGGGAAATACAAACTGGTACGGAAGATCGGGTCTGGCTC
CTTCGGGGACATTTATCTGGCCATCAACATCACCAACGGCGAGGAAGTGGCAGTGAAGCTAGAGTCGCAGAAGGCCAGGC
ATCCCCAGTTGCTGTACGAGAGCAAACTCTATAAGATTCTTCAAGGTGGGGTTGGCATCCCCCACATACGGTGGTATGGA
CAGGAAAAAGACTATAATGTACTAGTCATGGATCTTCTGGGACCCAGCCTCGAAGACCTCTTCAATTTCTGTTCAAGAAG
GTTCACAATGAAAACTGTACTTATGTTGGCTGACCAGATGATCAGTAGAATTGAATATGTGCATACGAAGAATTTTATAC
ACAGAGACATTAAGCCAGATAACTTCCTAATGGGTATTGGTCGTCACTGTAATAAGTTATTCCTTATTGATTTTGGTTTG
GCCAAAAAGTACAGAGACAACAGAACAAGGCAACACATACCATATAGAGAAGATAAAAACCTCACTGGCACTGCCCGATA
TGCTAGCATCAATGCACATCTTGGTATTGAACAGAGCCGCCGAGATGACATGGAGTCATTAGGATATGTTTTGATGTATT
TTAATAGAACCAGCCTGCCGTGGCAAGGACTAAAGGCTGCAACAAAGAAACAAAAATACGAGAAGATTAGCGAAAAGAAG
ATGTCCACTCCTGTTGAAGTTTTATGTAAGGGGTTTCCTGCGGAGTTTGCCATGTACTTAAACTATTGTCGTGGGCTGCG
CTTTGAGGAAGCCCCGGATTACATGTATCTGAGGCAGCTATTCCGCATCCTTTTCAGGACCCTGAACCACCAATATGACT
ACACATTTGATTGGACAATGTTAAAGCAGAAAGCAGCACAGCAGGCAGCATCTTCCAGTGGGCAGGGTCAGCAGGCCCAA
ACCCCCACAGGTTTCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 57 .04 RPM |
| SRP017611_kidney | 128 .72 RPM |
| SRP017611_brain | 165 .73 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000005326 | possible_ortholog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000018286 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000021121 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000113712 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000013926 | possible_ortholog | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000002910 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000001758 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000009937 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000011446 | possible_ortholog | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000015356 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000014435 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000022141 | possible_ortholog | 1 retrogene | |
| Drosophila melanogaster | FBgn0015024 | ortholog_one2many | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_500 | 90.68 | 99.08 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_502 | 94.75 | 99.69 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_506 | 62.94 | 51.38 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ocun_644 | 95.37 | 99.69 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ocun_1068 | 68.61 | 66.77 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ocun_1098 | 96.60 | 99.69 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ocun_1506 | 88.24 | 99.38 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000006669 retrocopies