Parental gene: | Hcfc1r1, ENSMUSG00000023904 |
| Aliases: | None |
| Description: | host cell factor C1 regulator 1 (XPO1-dependent) [Source:MGI Symbol;Acc:MGI:2663619] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 17:23673595..23675227(+) |
>ENSMUSG00000023904
ATGATCCTGCAACAGCCCCTGGAGCGAGGTCCCCCAAGTCGGGACCCACGGGCCACCACTGGGGTAACTCGCGGCCTAAA
CGCCAGTCTTTCCCCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGAGAACATGGCCACCCATTTCTCCCGACTCA
GCCTACATAATGACCACCCCTACTGCAGCCCCCCTGTGACTTTTCCCGAAGCCCTGCCACCACTCAGGAGCCCTTGCCCA
GAGCTGCTTCTCTGGCGCTATCCCGGGAGCCTGATTCCTGAAGCCCTCAGGCTGCTGAGGCTGGGGGATACCCCCAGTCC
CTACTACCCTGCGTCCCCAGCTGGGGATATCGTGGAGCTCTGA
ATGATCCTGCAACAGCCCCTGGAGCGAGGTCCCCCAAGTCGGGACCCACGGGCCACCACTGGGGTAACTCGCGGCCTAAA
CGCCAGTCTTTCCCCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGAGAACATGGCCACCCATTTCTCCCGACTCA
GCCTACATAATGACCACCCCTACTGCAGCCCCCCTGTGACTTTTCCCGAAGCCCTGCCACCACTCAGGAGCCCTTGCCCA
GAGCTGCTTCTCTGGCGCTATCCCGGGAGCCTGATTCCTGAAGCCCTCAGGCTGCTGAGGCTGGGGGATACCCCCAGTCC
CTACTACCCTGCGTCCCCAGCTGGGGATATCGTGGAGCTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 34 .95 RPM |
| SRP007412_cerebellum | 29 .57 RPM |
| SRP007412_heart | 49 .59 RPM |
| SRP007412_kidney | 30 .18 RPM |
| SRP007412_liver | 14 .91 RPM |
| SRP007412_testis | 7 .91 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000005504 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000015444 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_767 | 80.67 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_1485 | 87.39 | 95.69 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_1577 | 67.23 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_1646 | 73.73 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mmus_2644 | 56.19 | 88.79 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000023904 retrocopies