Parental gene:

VAPB, ENSMODG00000016549

Aliases:None
Description:VAMP (vesicle-associated membrane protein)-associated protein B and C [Source:HGNC Symbol;Acc:12649]
Organism:Opossum (Monodelphis domestica)
Coordinates:1:484725260..484788913(-)


>ENSMODG00000016549
ATGGCGAAAGTGGAGCAGGTTCTGAGCCTAGAGCCGCAGCACGAGCTCAAATTCAAAGGTCCCTTCACAGATGTTGTCAC
CACCAACCTAAAGCTTGGCAACCCTTCTGACCGAAATGTGTGTTTCAAAGTGAAGACTACTGCACCCCGCCGGTACTGTG
TAAGACCTAATAGTGGAATTATTGATGCGGGAACATCAATCAATGTGTCTGTGATGCTACAGCCTTTCGATTATGATCCT
AATGAGAAAAGTAAACACAAGTTTATGGTTCAATCTATGTTTGCTCCAACGGACACCTCCGATATGGAAGCAGTAGAGGC
AAAGCCAGAAGATCTTATGGATTCAAAACTTAGGTGTGTGTTTGAATTGCCAGCAGAGAATGATAAACCGCATGATGTAG
AAATAAATAAAATTATGTCCACAACGGCAACAAAGACAGAATCATCTGTTATGTCTAAATCTATAAGTTCTTCTTTGGAT
GATACTGAAGCTAAGAAAGTAATGGAAGAATGTAAAAGGCTGCAAGTAGAAGTTCAGAGGTTACAGGAGGAAAACAAACA
ATTTAAGGAAGAAGATGGGCTGCGGATGAGGAAGACACTGCAGAGCAACAGCCCAGCTTCCACTGCAGCCACCATTGTGA
AGGAAGAAGGGCTTAGCACCCGACTTCTCGCTCTGGTCGTTCTGTTCTTTATCGTCGGTGTAATTATAGGGAAAATTGCC
TTATAG

Library Parental gene expression (RPM)
SRP007412_brain 161 .63 RPM
SRP007412_cerebellum 126 .01 RPM
SRP007412_heart 78 .74 RPM
SRP007412_kidney 96 .13 RPM
SRP007412_liver 78 .54 RPM
SRP007412_testis 11 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000017424 ortholog_one2one 1 retrogene
retro_btau_1010,
Dasypus novemcinctus ENSDNOG00000012711 ortholog_one2one 1 retrogene
retro_dnov_206,
Echinops telfairi ENSETEG00000017229 ortholog_one2one 1 retrogene
retro_etel_1235,
Macropus eugenii ENSMEUG00000009788 ortholog_one2one 1 retrogene
retro_meug_842,
Monodelphis domestica ENSMODG00000021442 within_species_paralog 1 retrogene
retro_mdom_57,
Nomascus leucogenys ENSNLEG00000009351 ortholog_one2many 1 retrogene
retro_nleu_55,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_919 64.37 70.12
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Download FASTA sequences of all ENSMODG00000016549 retrocopies