Parental gene: | PTPN11, ENSMMUG00000013253 |
| Aliases: | PTPN11, SHP2 |
| Description: | tyrosine-protein phosphatase non-receptor type 11 [Source:RefSeq peptide;Acc:NP_001248038] |
| Organism: | Rhesus macaque (Macaca mulatta) |
| Coordinates: | 11:113346600..113440184(+) |
>ENSMMUG00000013253
ATGACATCGCGGAGATGGTTTCACCCAAATATCACTGGTGTGGAGGCGGAAAACCTACTGTTGACAAGAGGAGTTGATGG
CAGTTTTTTGGCAAGGCCTAGTAAAAGTAACCCTGGAGACTTCACACTTTCCGTTAGAAGAAATGGAGCTGTCACCCACA
TCAAGATTCAGAACACTGGTGATTACTATGACCTGTATGGAGGGGAGAAATTTGCCACTTTGGCAGAGTTGGTCCAGTAT
TACATGGAACATCACGGGCAATTAAAAGAGAAGAATGGAGATGTTATTGAGCTTAAATATCCTCTGAACTGTGCAGATCC
TACCTCTGAAAGGTGGTTTCATGGACACCTCTCTGGGAAAGAAGCAGAGAAATTATTAACTGAAAAAGGAAAACATGGTA
GTTTTCTTGTACGAGAGAGCCAGAGCCACCCTGGAGATTTTGTTCTCTCTGTGCGCACTGGTGATGACAAAGGGGAGAGC
AATGACGGCAAGTCTAAAGTGACCCATGTTATGATTCGCTGTCAGGAACTGAAATATGACGTTGGCGGAGGAGAACGGTT
TGATTCTTTGACAGATCTTGTGGAACATTACAAGAAGAATCCTATGGTGGAAACATTGGGTACAGTACTACAACTCAAGC
AGCCCCTTAACACGACTCGTATAAATGCTGCTGAAATAGAAAGCAGAGTTCGAGAACTAAGCAAATTAGCTGAGACCACA
GATAAAGTCAAACAAGGCTTTTGGGAAGAATTTGAGACACTACAACAACAGGAGTGCAAACTTCTGTACAGCCGAAAAGA
GGGTCAAAGGCAAGAAAACAAAAACAAAAATAGATATAAAAACATCCTGCCCTTTGATCATACCAGGGTTGTCCTACATG
ATGGTGATCCCAATGAGCCTGTTTCAGATTACATCAATGCAAATATCATCATGCCTGAATTTGAAACCAAGTGCAACAAT
TCAAAGCCCAAAAAGAGTTACATTGCCACACAAGGCTGCCTGCAGAACACAGTGAACGACTTTTGGCGGATGGTGTTCCA
AGAAAACTCCCGAGTGATTGTCATGACAACGAAAGAAGTGGAGAGAGGAAAGAGTAAATGTGTCAAATACTGGCCTGATG
AGTATGCTCTAAAAGAATATGGCGTCATGCGTGTTAGGAATGTCAAAGAAAGTGCTGCTCATGACTATACGCTAAGAGAA
CTTAAACTTTCAAAGGTTGGACAAGGGAATACGGAGAGAACGGTCTGGCAATACCACTTTCGGACCTGGCCGGACCACGG
AGTGCCCAGCGACCCCGGGGGCGTGCTGGACTTCCTGGAGGAGGTGCACCATAAGCAGGAGAGCATCATGGATGCAGGGC
CGGTCGTGGTGCACTGCAGTGCTGGAATTGGCCGGACAGGGACATTCATTGTGATTGATATTCTTATTGACATCATCAGA
GAGAAAGGTGTTGACTGCGACATTGACGTTCCCAAAACCATCCAGATGGTGCGGTCTCAGAGGTCAGGGATGGTCCAGAC
AGAAGCACAGTACCGATTTATCTATATGGCGGTCCAGCATTATATTGAAACACTACAGCGCAGGATTGAAGAAGAGCAGA
AAAGCAAGAGGAAAGGGCATGAATATACAAATATTAAGTATTCTCTAGCGGACCAGACGAGTGGAGATCAGAGCCCCCTC
CCGCCTTGTACTCCAACGCCACCCTGTGCAGAAATGAGAGAAGACAGTGCTAGAGTCTATGAAAACGTGGGCCTGATGCA
ACAGCAGAAAAGTTTCAGATGA
ATGACATCGCGGAGATGGTTTCACCCAAATATCACTGGTGTGGAGGCGGAAAACCTACTGTTGACAAGAGGAGTTGATGG
CAGTTTTTTGGCAAGGCCTAGTAAAAGTAACCCTGGAGACTTCACACTTTCCGTTAGAAGAAATGGAGCTGTCACCCACA
TCAAGATTCAGAACACTGGTGATTACTATGACCTGTATGGAGGGGAGAAATTTGCCACTTTGGCAGAGTTGGTCCAGTAT
TACATGGAACATCACGGGCAATTAAAAGAGAAGAATGGAGATGTTATTGAGCTTAAATATCCTCTGAACTGTGCAGATCC
TACCTCTGAAAGGTGGTTTCATGGACACCTCTCTGGGAAAGAAGCAGAGAAATTATTAACTGAAAAAGGAAAACATGGTA
GTTTTCTTGTACGAGAGAGCCAGAGCCACCCTGGAGATTTTGTTCTCTCTGTGCGCACTGGTGATGACAAAGGGGAGAGC
AATGACGGCAAGTCTAAAGTGACCCATGTTATGATTCGCTGTCAGGAACTGAAATATGACGTTGGCGGAGGAGAACGGTT
TGATTCTTTGACAGATCTTGTGGAACATTACAAGAAGAATCCTATGGTGGAAACATTGGGTACAGTACTACAACTCAAGC
AGCCCCTTAACACGACTCGTATAAATGCTGCTGAAATAGAAAGCAGAGTTCGAGAACTAAGCAAATTAGCTGAGACCACA
GATAAAGTCAAACAAGGCTTTTGGGAAGAATTTGAGACACTACAACAACAGGAGTGCAAACTTCTGTACAGCCGAAAAGA
GGGTCAAAGGCAAGAAAACAAAAACAAAAATAGATATAAAAACATCCTGCCCTTTGATCATACCAGGGTTGTCCTACATG
ATGGTGATCCCAATGAGCCTGTTTCAGATTACATCAATGCAAATATCATCATGCCTGAATTTGAAACCAAGTGCAACAAT
TCAAAGCCCAAAAAGAGTTACATTGCCACACAAGGCTGCCTGCAGAACACAGTGAACGACTTTTGGCGGATGGTGTTCCA
AGAAAACTCCCGAGTGATTGTCATGACAACGAAAGAAGTGGAGAGAGGAAAGAGTAAATGTGTCAAATACTGGCCTGATG
AGTATGCTCTAAAAGAATATGGCGTCATGCGTGTTAGGAATGTCAAAGAAAGTGCTGCTCATGACTATACGCTAAGAGAA
CTTAAACTTTCAAAGGTTGGACAAGGGAATACGGAGAGAACGGTCTGGCAATACCACTTTCGGACCTGGCCGGACCACGG
AGTGCCCAGCGACCCCGGGGGCGTGCTGGACTTCCTGGAGGAGGTGCACCATAAGCAGGAGAGCATCATGGATGCAGGGC
CGGTCGTGGTGCACTGCAGTGCTGGAATTGGCCGGACAGGGACATTCATTGTGATTGATATTCTTATTGACATCATCAGA
GAGAAAGGTGTTGACTGCGACATTGACGTTCCCAAAACCATCCAGATGGTGCGGTCTCAGAGGTCAGGGATGGTCCAGAC
AGAAGCACAGTACCGATTTATCTATATGGCGGTCCAGCATTATATTGAAACACTACAGCGCAGGATTGAAGAAGAGCAGA
AAAGCAAGAGGAAAGGGCATGAATATACAAATATTAAGTATTCTCTAGCGGACCAGACGAGTGGAGATCAGAGCCCCCTC
CCGCCTTGTACTCCAACGCCACCCTGTGCAGAAATGAGAGAAGACAGTGCTAGAGTCTATGAAAACGTGGGCCTGATGCA
ACAGCAGAAAAGTTTCAGATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 85 .36 RPM |
| SRP007412_brain | 106 .78 RPM |
| SRP007412_cerebellum | 55 .47 RPM |
| SRP007412_heart | 48 .93 RPM |
| SRP007412_kidney | 34 .62 RPM |
| SRP007412_liver | 10 .25 RPM |
| SRP007412_testis | 8 .82 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000012464 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000179295 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010689 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000003120 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000000078 | ortholog_one2one | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000004976 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmul_1501 | 84.52 | 52.28 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmul_1792 | 86.26 | 57.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmul_1877 | 89.39 | 52.45 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmul_2345 | 89.13 | 61.89 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMMUG00000013253 retrocopies