Parental gene: | OCIAD1, ENSLACG00000014002 |
| Aliases: | None |
| Description: | None |
| Organism: | Coelacanth (Latimeria chalumnae) |
| Coordinates: | JH127019.1:944144..970444(+) |
>ENSLACG00000014002
ATGGCTTCAACAAAAGTAACTGAGAGCGGTCATCCTCACCAGCAACAATATGGAGCAGGGCAGAACCCTGCTGGGATGGC
TTATATCCCCACAGATGAAGAAAGAAGAGTCTTTCGAGAATGCAATGAAGAAAGTTTCTGGTATAGATCTCTGCCCTTTT
CTGCAGTAAGTATGCTCCTCACTCAAGGGTTAATCTCTAGAGGGATTCTTACAACCTCGTCAAGGTTTGGCTCTCTTCCT
AAAGTTGCATTTGCTGGTGTCTGTGGCTATTTGGCTGGAAAGGTTTCTTACATGAAGACGTGCCAGGAGAAGTTTAAGAG
GCTGGACAATTCCCCACTGGGAGAGGCTCTTCGCCACAGAACACTTCCACCCCGATACGGCAATCAGAAGGCAGAGTTTA
GTGACACAGAAACCTCACAACCTTTACCTTCATTTGAAGGCAGTCCTGCAATTGAAACTCCCTTATACTCTGATGATTAT
AGCTACATTGAGCATTCTTCATCCAGTTATGAGCCTGTCCCTTTTAGCGCCTCACTTAGCGAATCCTCACCAACTGGAGT
TGATGAAAGCTATCTTCAAGCACCCATTCAGCTGGTGGAAGAAGAAAAATCAAAGAGAAAGCCTGTCACATATGAAGAGT
TAAGGAACAGGAATAGAGAGACGTATGAGGTGACCATGACTCAGAAGGCCGAGATACTGCTCAAACCTTCCCAAGAAAGA
ACACCTAAGAAAGAAGTTAAAACAAACCAGTATGGCGATGCCTGGGAAGAATAA
ATGGCTTCAACAAAAGTAACTGAGAGCGGTCATCCTCACCAGCAACAATATGGAGCAGGGCAGAACCCTGCTGGGATGGC
TTATATCCCCACAGATGAAGAAAGAAGAGTCTTTCGAGAATGCAATGAAGAAAGTTTCTGGTATAGATCTCTGCCCTTTT
CTGCAGTAAGTATGCTCCTCACTCAAGGGTTAATCTCTAGAGGGATTCTTACAACCTCGTCAAGGTTTGGCTCTCTTCCT
AAAGTTGCATTTGCTGGTGTCTGTGGCTATTTGGCTGGAAAGGTTTCTTACATGAAGACGTGCCAGGAGAAGTTTAAGAG
GCTGGACAATTCCCCACTGGGAGAGGCTCTTCGCCACAGAACACTTCCACCCCGATACGGCAATCAGAAGGCAGAGTTTA
GTGACACAGAAACCTCACAACCTTTACCTTCATTTGAAGGCAGTCCTGCAATTGAAACTCCCTTATACTCTGATGATTAT
AGCTACATTGAGCATTCTTCATCCAGTTATGAGCCTGTCCCTTTTAGCGCCTCACTTAGCGAATCCTCACCAACTGGAGT
TGATGAAAGCTATCTTCAAGCACCCATTCAGCTGGTGGAAGAAGAAAAATCAAAGAGAAAGCCTGTCACATATGAAGAGT
TAAGGAACAGGAATAGAGAGACGTATGAGGTGACCATGACTCAGAAGGCCGAGATACTGCTCAAACCTTCCCAAGAAAGA
ACACCTAAGAAAGAAGTTAAAACAAACCAGTATGGCGATGCCTGGGAAGAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| DRP000627_pectoral_fin | 16 .36 RPM |
| DRP000627_kidney | 4 .02 RPM |
| DRP000627_pelvic_fin | 16 .57 RPM |
| DRP000627_pharynx | 3 .45 RPM |
| DRP000627_gill | 4 .78 RPM |
| DRP000627_tail_muscle | 3 .24 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000011863 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000005961 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000010655 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000020640 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000018132 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000014963 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_lcha_88 | 70.00 | 52.53 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSLACG00000014002 retrocopies