Parental gene:

SLC25A3, ENSLACG00000007024

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH126824.1:251242..265985(-)


>ENSLACG00000007024
ATGTATTCGCAAGTATGTCAGCTGGCCCGAGCGAACCCCTTCTCCGCTCCCCATTTTCAGCTGGTGCAACAGGACGGGCT
GCTGAACGCTAGGAAGAGCGCCGTGCCGCAGACCAGCTACCGGCGCTTCGCTGCGGCCGCCGTCCAAGAAACGGAAGATT
ATAGCTGTGAATATGGATCAACCAAGTTTTATGCTCTCTGTGGCTTTGGTGGGATACTTAGTTGTGGTACAACACACACG
GCTGTTGTTCCATTAGATCTGGTTAAATGCAGAATACAGGTGGATCCCGCAAAATACAAAAGTATTTTCAATGGCTTTTC
CATCACAATCCGAGAGGATGGCTTTCGGGGGCTAGCAAAAGGATGGGCTCCAACTTTTATTGGCTATTCCATGCAAGGGC
TCTGCAAGTTTGGATTTTATGAAGTTTTTAAGGTCCTGTATGGCAACATGCTGGGTGAGGAAAACGCCTACCTGTGGCGT
ACTTCTTTGTACTTGGCTGCTTCGGCGAGTGCAGAGTTCTTTGCCGACATTGCTCTGGCTCCCATGGAAGCTGCTAAGGT
CCGTATTCAGACCCAGCCAGGTTACGCTAACACTCTGAGGGAAGCTGTTCCTAAAATGTATGCTGAAGAAGGAATATGGG
CTTTCTACAAGGGTGTTGCTCCTCTGTGGATGAGGCAGATTCCATACACAATGATGAAATTTGCTTGCTTTGAGCGTACA
GTTGAAGCCCTCTACAGATACGTGGTACCCAAACCTCGTAGCGAGTGCTCCAAGGGGGAACAGTTGGTTGTCACTTTTGT
GGCCGGTTATATTGCTGGTGTCTTCTGTGCTATTGTGTCCCATCCTGCTGACTCGGTCGTTTCAGTGTTGAATAAGGAAA
AGGGAAGCTCTGCTCTGCAGGTCCTCAAGAGGCTTGGATTCAAAGGTGTATGGAAGGGTCTTGTAGCCCGTATCATTATG
ATTGGTACACTGACTGCTCTGCAGTGGTTCATCTATGACTCTGTGAAGGTCTACTTTAGACTTCCTCGTCCACCTCCACC
TGAGATGCCAGAGTCTCTGAAGAAGAAGCTTGGTCTGACCGAGTAA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 99 .67 RPM
DRP000627_kidney 146 .84 RPM
DRP000627_pelvic_fin 105 .62 RPM
DRP000627_pharynx 145 .88 RPM
DRP000627_gill 105 .71 RPM
DRP000627_tail_muscle 122 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013232 ortholog_one2one 1 retrogene
retro_acar_35,
Bos taurus ENSBTAG00000012890 ortholog_one2one 1 retrogene
retro_btau_172,
Canis familiaris ENSCAFG00000006545 ortholog_one2many 1 retrogene
retro_cfam_880,
Callithrix jacchus ENSCJAG00000002392 ortholog_one2one 2 retrogenes
retro_cjac_3315, retro_cjac_812,
Dipodomys ordii ENSDORG00000011431 ortholog_one2one 1 retrogene
retro_dord_321,
Equus caballus ENSECAG00000015135 ortholog_one2one 1 retrogene
retro_ecab_481,
Echinops telfairi ENSETEG00000012678 ortholog_one2one 1 retrogene
retro_etel_1748,
Homo sapiens ENSG00000075415 ortholog_one2one 1 retrogene
retro_hsap_392,
Gorilla gorilla ENSGGOG00000015886 ortholog_one2one 1 retrogene
retro_ggor_394,
Macropus eugenii ENSMEUG00000016593 ortholog_one2one 2 retrogenes
retro_meug_405, retro_meug_658,
Microcebus murinus ENSMICG00000003520 ortholog_one2one 1 retrogene
retro_mmur_298,
Myotis lucifugus ENSMLUG00000008330 ortholog_one2one 1 retrogene
retro_mluc_1184,
Macaca mulatta ENSMMUG00000023036 ortholog_one2one 1 retrogene
retro_mmul_496,
Monodelphis domestica ENSMODG00000007717 ortholog_one2one 2 retrogenes
retro_mdom_2026, retro_mdom_293,
Mus musculus ENSMUSG00000061904 ortholog_one2one 1 retrogene
retro_mmus_1959,
Nomascus leucogenys ENSNLEG00000005973 ortholog_one2one 1 retrogene
retro_nleu_2402,
Oryctolagus cuniculus ENSOCUG00000011847 ortholog_one2one 1 retrogene
retro_ocun_390,
Otolemur garnettii ENSOGAG00000012222 ortholog_one2one 2 retrogenes
retro_ogar_1816, retro_ogar_2052,
Pongo abelii ENSPPYG00000004858 ortholog_one2one 1 retrogene
retro_pabe_1768,
Pan troglodytes ENSPTRG00000005333 ortholog_one2one 1 retrogene
retro_ptro_302,
Pteropus vampyrus ENSPVAG00000005890 ortholog_one2one 1 retrogene
retro_pvam_212,
Sorex araneus ENSSARG00000001149 ortholog_one2one 1 retrogene
retro_sara_262,
Ictidomys tridecemlineatus ENSSTOG00000027633 ortholog_one2one 2 retrogenes
retro_itri_485, retro_itri_90,
Tupaia belangeri ENSTBEG00000014548 ortholog_one2one 1 retrogene
retro_tbel_1792,
Tursiops truncatus ENSTTRG00000004739 ortholog_one2one 1 retrogene
retro_ttru_692,
Vicugna pacos ENSVPAG00000004704 ortholog_one2one 1 retrogene
retro_vpac_455,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_4 76.21 86.15
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Download FASTA sequences of all ENSLACG00000007024 retrocopies