Parental gene:

TRAF6, ENSG00000175104

Aliases:None
Description:TNF receptor-associated factor 6, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:12036]
Organism:Human (Homo sapiens)
Coordinates:11:36508576..36531822(-)


>ENSG00000175104
ATGAGTCTGCTAAACTGTGAAAACAGCTGTGGATCCAGCCAGTCTGAAAGTGACTGCTGTGTGGCCATGGCCAGCTCCTG
TAGCGCTGTAACAAAAGATGATAGTGTGGGTGGAACTGCCAGCACGGGGAACCTCTCCAGCTCATTTATGGAGGAGATCC
AGGGATATGATGTAGAGTTTGACCCACCCCTGGAAAGCAAGTATGAATGCCCCATCTGCTTGATGGCATTACGAGAAGCA
GTGCAAACGCCATGCGGCCATAGGTTCTGCAAAGCCTGCATCATAAAATCAATAAGGGATGCAGGTCACAAATGTCCAGT
TGACAATGAAATACTGCTGGAAAATCAACTATTTCCAGACAATTTTGCAAAACGTGAGATTCTTTCTCTGATGGTGAAAT
GTCCAAATGAAGGTTGTTTGCACAAGATGGAACTGAGACATCTTGAGGATCATCAAGCACATTGTGAGTTTGCTCTTATG
GATTGTCCCCAATGCCAGCGTCCCTTCCAAAAATTCCATATTAATATTCACATTCTGAAGGATTGTCCAAGGAGACAGGT
TTCTTGTGACAACTGTGCTGCATCAATGGCATTTGAAGATAAAGAGATCCATGACCAGAACTGTCCTTTGGCAAATGTCA
TCTGTGAATACTGCAATACTATACTCATCAGAGAACAGATGCCTAATCATTATGATCTAGACTGCCCTACAGCCCCAATT
CCATGCACATTCAGTACTTTTGGTTGCCATGAAAAGATGCAGAGGAATCACTTGGCACGCCACCTACAAGAGAACACCCA
GTCACACATGAGAATGTTGGCCCAGGCTGTTCATAGTTTGAGCGTTATACCCGACTCTGGGTATATCTCAGAGGTCCGGA
ATTTCCAGGAAACTATTCACCAGTTAGAGGGTCGCCTTGTAAGACAAGACCATCAAATCCGGGAGCTGACTGCTAAAATG
GAAACTCAGAGTATGTATGTAAGTGAGCTCAAACGAACCATTCGAACCCTTGAGGACAAAGTTGCTGAAATCGAAGCACA
GCAGTGCAATGGAATTTATATTTGGAAGATTGGCAACTTTGGAATGCATTTGAAATGTCAAGAAGAGGAGAAACCTGTTG
TGATTCATAGCCCTGGATTCTACACTGGCAAACCCGGGTACAAACTGTGCATGCGCTTGCACCTTCAGTTACCGACTGCT
CAGCGCTGTGCAAACTATATATCCCTTTTTGTCCACACAATGCAAGGAGAATATGACAGCCACCTCCCTTGGCCCTTCCA
GGGTACAATACGCCTTACAATTCTTGATCAGTCTGAAGCACCTGTAAGGCAAAACCACGAAGAGATAATGGATGCCAAAC
CAGAGCTGCTTGCTTTCCAGCGACCCACAATCCCACGGAACCCAAAAGGTTTTGGCTATGTAACTTTTATGCATCTGGAA
GCCCTAAGACAAAGAACTTTCATTAAGGATGACACATTATTAGTGCGCTGTGAGGTCTCCACCCGCTTTGACATGGGTAG
CCTTCGGAGGGAGGGTTTTCAGCCACGAAGTACTGATGCAGGGGTATAG

Library Parental gene expression (RPM)
bodymap2_liver 7 .52 RPM
bodymap2_lung 18 .74 RPM
bodymap2_breast 13 .54 RPM
bodymap2_adipose 12 .58 RPM
bodymap2_adrenal 16 .11 RPM
bodymap2_skeletal_muscle 15 .93 RPM
bodymap2_thyroid 16 .48 RPM
bodymap2_prostate 16 .38 RPM
bodymap2_colon 11 .43 RPM
bodymap2_testis 19 .53 RPM
bodymap2_brain 12 .38 RPM
bodymap2_heart 13 .61 RPM
bodymap2_white_blood_cells 31 .62 RPM
bodymap2_lymph_node 16 .45 RPM
bodymap2_ovary 18 .56 RPM
bodymap2_kidney 20 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000036009 ortholog_one2one 1 retrogene
retro_btau_391,
Gorilla gorilla ENSGGOG00000005854 ortholog_one2one 1 retrogene
retro_ggor_586,
Nomascus leucogenys ENSNLEG00000017949 ortholog_one2one 1 retrogene
retro_nleu_782,
Pan troglodytes ENSPTRG00000003510 ortholog_one2one 1 retrogene
retro_ptro_488,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_680 91.11 68.77
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Download FASTA sequences of all ENSG00000175104 retrocopies