Parental gene:

SUGT1, ENSG00000165416

Aliases:None
Description:SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:HGNC Symbol;Acc:16987]
Organism:Human (Homo sapiens)
Coordinates:13:53226843..53262433(+)


>ENSG00000165416
ATGGCGGCGGCTGCAGCAGGAACTGCAACATCCCAGAGGTTTTTCCAGAGCTTCTCGGATGCCCTAATCGACGAGGACCC
CCAGGCGGCGTTAGAGGAGCTGACTAAGGCTTTGGAACAGAAACCAGATGATGCACAGTATTATTGTCAAAGAGCTTATT
GTCACATTCTTCTTGGGAATTACTGTGTTGCTGTTGCTGATGCAAAGAAGTCTCTAGAACTCAATCCAAATAATTCCACT
GCTATGCTGAGAAAAGGAATATGTGAATACCATGAAAAAAACTATGCTGCTGCCCTAGAAACTTTTACAGAAGGACAAAA
ATTAGATATAGAGACGGGGTTTCATCGTGTTGGCCAGGCTGGTCTCCAACTCTTGACCTCAAGTGATCCACCTGCCTTGG
ACTCCCAAAGTGCTGGGATTACAGGTGCAGATGCTAATTTCAGTGTCTGGATTAAAAGGTGTCAAGAAGCTCAGAATGGC
TCAGAATCTGAGGTGTGGACTCATCAGTCAAAAATCAAGTATGACTGGTATCAAACAGAATCTCAAGTAGTCATTACACT
TATGATCAAGAATGTTCAGAAGAATGATGTAAATGTGGAATTTTCAGAAAAAGAGTTGTCTGCTTTGGTTAAACTTCCTT
CTGGAGAGGATTACAATTTGAAACTGGAACTTCTTCATCCTATAATACCAGAACAGAGCACGTTTAAAGTACTTTCAACA
AAGATTGAAATTAAACTGAAAAAGCCAGAGGCTGTGAGATGGGAAAAGCTAGAGGGGCAAGGAGATGTGCCTACGCCAAA
ACAATTCGTAGCAGATGTAAAGAACCTATATCCATCATCATCTCCTTATACAAGAAATTGGGATAAATTGGTTGGTGAGA
TCAAAGAAGAAGAAAAGAATGAAAAGTTGGAGGGAGATGCAGCTTTAAACAGATTATTTCAGCAGATCTATTCAGATGGT
TCTGATGAAGTGAAACGTGCCATGAACAAATCCTTTATGGAGTCGGGTGGTACAGTTTTGAGTACCAACTGGTCTGATGT
AGGTAAAAGGAAAGTTGAAATCAATCCTCCTGATGATATGGAATGGAAAAAGTACTAA

Library Parental gene expression (RPM)
bodymap2_liver 19 .05 RPM
bodymap2_lung 30 .61 RPM
bodymap2_breast 29 .20 RPM
bodymap2_adipose 33 .41 RPM
bodymap2_adrenal 22 .39 RPM
bodymap2_skeletal_muscle 14 .24 RPM
bodymap2_thyroid 31 .86 RPM
bodymap2_prostate 37 .64 RPM
bodymap2_colon 64 .27 RPM
bodymap2_testis 57 .84 RPM
bodymap2_brain 27 .00 RPM
bodymap2_heart 24 .63 RPM
bodymap2_white_blood_cells 28 .11 RPM
bodymap2_lymph_node 42 .76 RPM
bodymap2_ovary 29 .76 RPM
bodymap2_kidney 38 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008606 ortholog_one2one 2 retrogenes
retro_amel_353, retro_amel_896,
Canis familiaris ENSCAFG00000004823 ortholog_one2many 1 retrogene
retro_cfam_136,
Callithrix jacchus ENSCJAG00000003604 ortholog_one2many 1 retrogene
retro_cjac_310,
Cavia porcellus ENSCPOG00000003374 ortholog_one2many 1 retrogene
retro_cpor_110,
Dasypus novemcinctus ENSDNOG00000002991 ortholog_one2one 1 retrogene
retro_dnov_2621,
Gorilla gorilla ENSGGOG00000006797 ortholog_one2one 1 retrogene
retro_ggor_1840,
Nomascus leucogenys ENSNLEG00000015700 ortholog_one2one 1 retrogene
retro_nleu_640,
Otolemur garnettii ENSOGAG00000008220 ortholog_one2many 1 retrogene
retro_ogar_41,
Pan troglodytes ENSPTRG00000005906 ortholog_one2one 1 retrogene
retro_ptro_1773,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2628 90.94 82.28
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Download FASTA sequences of all ENSG00000165416 retrocopies