Parental gene:

SHC1, ENSG00000160691

Aliases:SHC1, SHC, SHCA
Description:SHC (Src homology 2 domain containing) transforming protein 1 [Source:HGNC Symbol;Acc:10840]
Organism:Human (Homo sapiens)
Coordinates:1:154934773..154946871(-)


>ENSG00000160691
ATGGATCTCCTGCCCCCCAAGCCCAAGTACAATCCACTCCGGAATGAGTCTCTGTCATCGCTGGAGGAAGGGGCTTCTGG
GTCCACCCCCCCGGAGGAGCTGCCTTCCCCATCAGCTTCATCCCTGGGGCCCATCCTGCCTCCTCTGCCTGGGGACGATA
GTCCCACTACCCTGTGCTCCTTCTTCCCCCGGATGAGCAACCTGAGGCTGGCCAACCCGGCTGGGGGGCGCCCAGGGTCT
AAGGGGGAGCCAGGAAGGGCAGCTGATGATGGGGAGGGGATCGTAGGGGCAGCCATGCCAGACTCAGGCCCCCTACCCCT
CCTCCAGGACATGAACAAGCTGAGTGGAGGCGGCGGGCGCAGGACTCGGGTGGAAGGGGGCCAGCTTGGGGGCGAGGAGT
GGACCCGCCACGGGAGCTTTGTCAATAAGCCCACGCGGGGCTGGCTGCATCCCAACGACAAAGTCATGGGACCCGGGGTT
TCCTACTTGGTTCGGTACATGGGTTGTGTGGAGGTCCTCCAGTCAATGCGTGCCCTGGACTTCAACACCCGGACTCAGGT
CACCAGGGAGGCCATCAGTCTGGTGTGTGAGGCTGTGCCGGGTGCTAAGGGGGCGACAAGGAGGAGAAAGCCCTGTAGCC
GCCCGCTCAGCTCTATCCTGGGGAGGAGTAACCTGAAATTTGCTGGAATGCCAATCACTCTCACCGTCTCCACCAGCAGC
CTCAACCTCATGGCCGCAGACTGCAAACAGATCATCGCCAACCACCACATGCAATCTATCTCATTTGCATCCGGCGGGGA
TCCGGACACAGCCGAGTATGTCGCCTATGTTGCCAAAGACCCTGTGAATCAGAGAGCCTGCCACATTCTGGAGTGTCCCG
AAGGGCTTGCCCAGGATGTCATCAGCACCATTGGCCAGGCCTTCGAGTTGCGCTTCAAACAATACCTCAGGAACCCACCC
AAACTGGTCACCCCTCATGACAGGATGGCTGGCTTTGATGGCTCAGCATGGGATGAGGAGGAGGAAGAGCCACCTGACCA
TCAGTACTATAATGACTTCCCGGGGAAGGAACCCCCCTTGGGGGGGGTGGTAGACATGAGGCTTCGGGAAGGAGCCGCTC
CAGGGGCTGCTCGACCCACTGCACCCAATGCCCAGACCCCCAGCCACTTGGGAGCTACATTGCCTGTAGGACAGCCTGTT
GGGGGAGATCCAGAAGTCCGCAAACAGATGCCACCTCCACCACCCTGTCCAGCAGGCAGAGAGCTTTTTGATGATCCCTC
CTATGTCAACGTCCAGAACCTAGACAAGGCCCGGCAAGCAGTGGGTGGTGCTGGGCCCCCCAATCCTGCTATCAATGGCA
GTGCACCCCGGGACCTGTTTGACATGAAGCCCTTCGAAGATGCTCTTCGCGTGCCTCCACCTCCCCAGTCGGTGTCCATG
GCTGAGCAGCTCCGAGGGGAGCCCTGGTTCCATGGGAAGCTGAGCCGGCGGGAGGCTGAGGCACTGCTGCAGCTCAATGG
GGACTTCCTGGTACGGGAGAGCACGACCACACCTGGCCAGTATGTGCTCACTGGCTTGCAGAGTGGGCAGCCTAAGCATT
TGCTACTGGTGGACCCTGAGGGTGTGGTTCGGACTAAGGATCACCGCTTTGAAAGTGTCAGTCACCTTATCAGCTACCAC
ATGGACAATCACTTGCCCATCATCTCTGCGGGCAGCGAACTGTGTCTACAGCAACCTGTGGAGCGGAAACTGTGA

Library Parental gene expression (RPM)
bodymap2_liver 65 .19 RPM
bodymap2_lung 131 .65 RPM
bodymap2_breast 88 .64 RPM
bodymap2_adipose 187 .55 RPM
bodymap2_adrenal 217 .06 RPM
bodymap2_skeletal_muscle 34 .16 RPM
bodymap2_thyroid 90 .67 RPM
bodymap2_prostate 75 .08 RPM
bodymap2_colon 110 .99 RPM
bodymap2_testis 52 .58 RPM
bodymap2_brain 19 .85 RPM
bodymap2_heart 29 .37 RPM
bodymap2_white_blood_cells 58 .41 RPM
bodymap2_lymph_node 123 .60 RPM
bodymap2_ovary 91 .97 RPM
bodymap2_kidney 68 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009236 ortholog_one2one 1 retrogene
retro_cjac_2573,
Nomascus leucogenys ENSNLEG00000011515 ortholog_one2one 1 retrogene
retro_nleu_2362,
Pongo abelii ENSPPYG00000000769 ortholog_one2one 1 retrogene
retro_pabe_3643,
Pan troglodytes ENSPTRG00000001397 ortholog_one2one 1 retrogene
retro_ptro_3117,
Tarsius syrichta ENSTSYG00000011380 ortholog_one2one 1 retrogene
retro_tsyr_1773,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4690 84.98 100.00
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Download FASTA sequences of all ENSG00000160691 retrocopies